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cn_combo_scaffold_52

Alias: VAR87_8

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Displaying items 1-30 of 310 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_52_1
unknown

Not on your lists

comp(510..857)
DNA (348bp) protein (116aa)

This feature has no annotations

cn_combo_scaffold_52_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(847..1710)
DNA (864bp) protein (288aa)
Putative metallophosphoesterase n=1 Tax=Variovorax paradoxus B4 RepID=T1X4F9_VARPD
putative metallophosphoesterase
Putative metallophosphoesterase {ECO:0000313|EMBL:AGU47787.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax pa
cn_combo_scaffold_52_3
unknown

Not on your lists

comp(1810..2838)
DNA (1029bp) protein (343aa)
hypothetical protein
cn_combo_scaffold_52_4
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2835..4100)
DNA (1266bp) protein (422aa)
HipA-like N-terminal domain protein n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4XJP9_9BURK
HipA-like N-terminal domain protein {ECO:0000313|EMBL:EFF73077.1}; TaxID=742159 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromo
hypothetical protein
cn_combo_scaffold_52_5
unknown

Not on your lists

comp(4097..4744)
DNA (648bp) protein (216aa)

This feature has no annotations

cn_combo_scaffold_52_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4741..5454)
DNA (714bp) protein (238aa)
Putative phosphoesterase, ICC n=1 Tax=Variovorax sp. CF313 RepID=J2T7R5_9BURK
Putative phosphoesterase, ICC {ECO:0000313|EMBL:EJL74097.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp.
putative phosphoesterase
cn_combo_scaffold_52_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5499..5849)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CWR2_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL80034.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Va
cn_combo_scaffold_52_8
Burkholderia sp. lig30, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6144..6407
DNA (264bp) protein (88aa)
Transcriptional regulator, XRE family n=1 Tax=Burkholderia sp. H160 RepID=B5WDM4_9BURK
Helix-turn-helix domain protein {ECO:0000313|EMBL:KDB08399.1}; TaxID=1192124 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholde
DNA-binding protein
cn_combo_scaffold_52_9
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7180..7650)
DNA (471bp) protein (157aa)
Integrase n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QWX9_RALPI
phage integrase Tax=GWA2_Curvibacter_64_110_curated
integrase
cn_combo_scaffold_52_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7764..8090
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XLY0_VARPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU53115.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus
cn_combo_scaffold_52_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8903..10258)
DNA (1356bp) protein (452aa)
phospholipase n=1 Tax=Variovorax paradoxus RepID=UPI000376CA31
phospholipase d/transphosphatidylase
Phospholipase D/Transphosphatidylase {ECO:0000313|EMBL:ADU38624.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovora
cn_combo_scaffold_52_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10422..11621
DNA (1200bp) protein (400aa)
Glycogen debranching enzyme n=1 Tax=Variovorax sp. CF313 RepID=J2T3I7_9BURK
Glycogen debranching enzyme {ECO:0000313|EMBL:EJL72567.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source
hypothetical protein
cn_combo_scaffold_52_13
unknown

Not on your lists

comp(11646..12575)
DNA (930bp) protein (310aa)

This feature has no annotations

cn_combo_scaffold_52_14
Curvibacter putative symbiont of Hydra magnipapillata, Curvibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12689..15475)
DNA (2787bp) protein (929aa)
Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YCF1_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:CBA30489.1}; TaxID=667019 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Curvibacter.;" source="Curvibacter
hypothetical protein
cn_combo_scaffold_52_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15724..16152)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VBA0_VARPE
Variovorax paradoxus strain MEDvA23 contig_49, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ28210.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
hypothetical protein
cn_combo_scaffold_52_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16161..17504)
DNA (1344bp) protein (448aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00
adenylosuccinate synthase (EC:6.3.4.4)
Adenylosuccinate synthetase n=1 Tax=Variovorax sp. CF313 RepID=J3CJ19_9BURK
cn_combo_scaffold_52_17
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17512..18492)
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2JXJ1_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL72570.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.
hypothetical protein
cn_combo_scaffold_52_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18530..19516)
DNA (987bp) protein (329aa)
Lipopolysaccharide kinase (Kdo/WaaP) family n=1 Tax=Variovorax sp. CF313 RepID=J3CJ93_9BURK
Lipopolysaccharide kinase (Kdo/WaaP) family {ECO:0000313|EMBL:EJL72571.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Vari
serine/threonine protein kinase
cn_combo_scaffold_52_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19527..20840)
DNA (1314bp) protein (438aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI0003634924
Variovorax paradoxus strain MEDvA23 contig_49, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ28214.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
hypothetical protein
cn_combo_scaffold_52_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20864..21709
DNA (846bp) protein (282aa)
Bis(5'-nucleosyl)-tetraphosphatase, symmetrical {ECO:0000256|SAAS:SAAS00088338}; EC=3.6.1.41 {ECO:0000256|SAAS:SAAS00088330};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burk
apaH; bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC:3.6.1.41)
Symmetrical bis(5'-nucleosyl)-tetraphosphatase n=1 Tax=Variovorax sp. CF313 RepID=J2KHK3_9BURK
cn_combo_scaffold_52_21
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21744..22517)
DNA (774bp) protein (258aa)
acetyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI0003713D42
Acetyltransferase, ribosomal protein N-acetylase {ECO:0000313|EMBL:EJL72574.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" sour
putative acetyltransferase, GNAT family
cn_combo_scaffold_52_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22555..24036
DNA (1482bp) protein (494aa)
Transcriptional regulator with HTH domain and aminotransferase domain containing protein n=1 Tax=Variovorax sp. CF313 RepID=J2JXJ3_9BURK
Transcriptional regulator with HTH domain and aminotransferase domain containing protein {ECO:0000313|EMBL:EJL72575.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderi
GntR family transcriptional regulator with aminotransferase domain
cn_combo_scaffold_52_23
Pseudomonas cichorii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24132..36275)
DNA (12144bp) protein (4048aa)
hypothetical protein n=1 Tax=Pseudomonas mandelii RepID=UPI00037EFDE6
Uncharacterized protein {ECO:0000313|EMBL:AHF69659.1}; TaxID=1441629 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas cicho
hypothetical protein
cn_combo_scaffold_52_24
unknown

Not on your lists

comp(36280..37062)
DNA (783bp) protein (261aa)

This feature has no annotations

cn_combo_scaffold_52_25
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37059..38543)
DNA (1485bp) protein (495aa)
hemolysin activation protein n=1 Tax=Acidovorax avenae RepID=UPI0002EC68CB
HlyD family type I secretion membrane fusion protein
Type I secretion membrane fusion protein, HlyD family {ECO:0000313|EMBL:ADX45953.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;"
cn_combo_scaffold_52_26
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38540..40783)
DNA (2244bp) protein (748aa)
type I secretion system ATPase (EC:3.6.3.43); K11004 ATP-binding cassette, subfamily B, bacterial HlyB/CyaB Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
type I secretion system ATPase (EC:3.6.3.43)
Type I secretion system ATPase n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q9N7_ACIAP
cn_combo_scaffold_52_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(41040..41957)
DNA (918bp) protein (306aa)
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain n=1 Tax=Variovorax sp. CF313 RepID=J2KAT3_9BURK
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain {ECO:0000313|EMBL:EJL70298.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderi
AraC family transcriptional regulator
cn_combo_scaffold_52_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42043..42732)
DNA (690bp) protein (230aa)
5-carboxymethyl-2-hydroxymuconate isomerase n=1 Tax=Variovorax paradoxus RepID=UPI000368C2A7
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase {ECO:0000313|EMBL:EJL70299.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadac
fumarylacetoacetate (FAA) hydrolase
cn_combo_scaffold_52_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(42833..43813)
DNA (981bp) protein (327aa)
ABC transporter, substrate-binding protein, aliphatic sulfonates family n=1 Tax=Variovorax sp. CF313 RepID=J2JR56_9BURK
ABC transporter, substrate-binding protein, aliphatic sulfonates family {ECO:0000313|EMBL:EJL70300.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholde
aliphatic sulfonates family ABC transporter periplsmic ligand-binding protein
cn_combo_scaffold_52_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43810..44817)
DNA (1008bp) protein (336aa)
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI0003714C46
putative ABC transporter, substrate-binding protein
Putative ABC transporter, substrate-binding protein {ECO:0000313|EMBL:AGU51064.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" s
Displaying items 1-30 of 310 in total

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