ggKbase home page

cn_combo_scaffold_51

Alias: VAR87_55

Search features with annotation key words

Displaying items 1-30 of 204 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_51_1
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(318..2522)
DNA (2205bp) protein (735aa)
Candidate histidine kinase, classic n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y6C4_RAMTT
histidine kinase
Candidate histidine kinase, classic {ECO:0000313|EMBL:AEG93998.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibact
cn_combo_scaffold_51_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2528..4222)
DNA (1695bp) protein (565aa)
Histidine kinase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V3V3_VARPE
histidine kinase
Histidine kinase {ECO:0000313|EMBL:ADU36977.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain
cn_combo_scaffold_51_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4227..5729)
DNA (1503bp) protein (501aa)
circadian clock protein, kaic (EC:2.7.11.1)
Putative circadian clock protein, KaiC {ECO:0000313|EMBL:ADU36978.1}; EC=2.7.11.1 {ECO:0000313|EMBL:ADU36978.1};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; C
Putative circadian clock protein, KaiC n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V3V4_VARPE
cn_combo_scaffold_51_4
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5966..6334
DNA (369bp) protein (123aa)
glyoxalase n=1 Tax=Variovorax paradoxus RepID=UPI0003707882
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:EJO32206.1}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;
Lactoylglutathione lyase and related lyases
cn_combo_scaffold_51_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6531..6944)
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XD90_VARPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU50528.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus
cn_combo_scaffold_51_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6929..7186)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2JZB6_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL73220.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Va
hypothetical protein
cn_combo_scaffold_51_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7361..8290)
DNA (930bp) protein (310aa)
Transcriptional regulator, LysR family n=1 Tax=Variovorax paradoxus B4 RepID=T1XNA8_VARPD
transcriptional regulator, LysR family
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AGU53779.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variov
cn_combo_scaffold_51_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8394..10544
DNA (2151bp) protein (717aa)
Putative indolepyruvate oxidoreductase subunit alpha n=1 Tax=Variovorax paradoxus B4 RepID=T1XNU2_VARPD
putative indolepyruvate oxidoreductase subunit alpha
Putative indolepyruvate oxidoreductase subunit alpha {ECO:0000313|EMBL:AGU53790.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;"
cn_combo_scaffold_51_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10541..12061
DNA (1521bp) protein (507aa)
Putative indolepyruvate oxidoreductase subunit beta n=1 Tax=Variovorax paradoxus B4 RepID=T1XNB7_VARPD
putative indolepyruvate oxidoreductase subunit beta
Putative indolepyruvate oxidoreductase subunit beta {ECO:0000313|EMBL:AGU53789.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" s
cn_combo_scaffold_51_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12108..13262
DNA (1155bp) protein (385aa)
Putative ABC transporter, branched-chain amino acid-binding protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XMF8_VARPD
putative ABC transporter, branched-chain amino acid-binding protein
Putative ABC transporter, branched-chain amino acid-binding protein {ECO:0000313|EMBL:AGU53788.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae;
cn_combo_scaffold_51_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13292..14452
DNA (1161bp) protein (387aa)
FMN-dependent alpha-hydroxy acid dehydrogenase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CVM3_VARPS
FMN-dependent alpha-hydroxy acid dehydrogenase
FMN-dependent alpha-hydroxy acid dehydrogenase {ECO:0000313|EMBL:ACS20526.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source=
cn_combo_scaffold_51_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14445..15317
DNA (873bp) protein (291aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XMK7_VARPD
branched-chain amino acid ABC transporter, permease protein
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:AGU53786.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovo
cn_combo_scaffold_51_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15314..16246
DNA (933bp) protein (311aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XNT7_VARPD
branched-chain amino acid ABC transporter, permease protein
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:AGU53785.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovo
cn_combo_scaffold_51_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16246..16995
DNA (750bp) protein (250aa)
Branched-chain amino acid ABC transporter, ATP-binding protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XNB2_VARPD
branched-chain amino acid ABC transporter, ATP-binding protein
Branched-chain amino acid ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AGU53784.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Vari
cn_combo_scaffold_51_15
Bordetella holmesii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17006..17725
DNA (720bp) protein (240aa)
Branched-chain amino acid ABC transporter ATPase n=3 Tax=Bordetella holmesii RepID=M5NV06_9BORD
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:KAK83656.1}; TaxID=1331212 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetel
branched-chain amino acid ABC transporter, ATP-binding protein
cn_combo_scaffold_51_16
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17733..18809
DNA (1077bp) protein (359aa)
putative mandelate racemase (MdlA) (EC:5.1.2.2); K01781 mandelate racemase [EC:5.1.2.2] id=5083547 bin=GWF1_Burkholderiales_GWF1_66_17 species=Azoarcus sp. KH32C genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
putative mandelate racemase Tax=GWE1_Burkholderiales_65_30_curated
putative mandelate racemase
cn_combo_scaffold_51_17
Thiorhodospira sibirica, Thiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19576..20832)
DNA (1257bp) protein (419aa)
Uncharacterized protein n=1 Tax=Thiorhodospira sibirica ATCC 700588 RepID=G4E1P3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EGZ50763.1}; Flags: Precursor;; TaxID=765914 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thiorhodospira.;" s
hypothetical protein
cn_combo_scaffold_51_18
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20829..21782)
DNA (954bp) protein (318aa)
Transcriptional regulator, LysR family n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GLW1_SORC5
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CAN90334.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" sourc
cn_combo_scaffold_51_19
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21959..22525
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00030BFB2F
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
hypothetical protein
cn_combo_scaffold_51_20
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22522..23322
DNA (801bp) protein (267aa)
alpha/beta hydrolase fold protein n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI00028968CC
Uncharacterized protein {ECO:0000313|EMBL:KFG68251.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.
Maspardin-like protein
cn_combo_scaffold_51_21
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

23385..24785
DNA (1401bp) protein (467aa)
Sugar transporter, permease protein n=1 Tax=Mycobacterium smegmatis MKD8 RepID=L8F9B7_MYCSM
transporter; K08369 MFS transporter, putative metabolite:H+ symporter Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
transporter
cn_combo_scaffold_51_22
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24807..25490)
DNA (684bp) protein (228aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BTW3_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHL24210.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp
cn_combo_scaffold_51_23
Comamonas aquatica, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25600..26601)
DNA (1002bp) protein (334aa)
ABC transporter substrate-binding protein n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2JE79_9BURK
ABC transporter substrate-binding protein {ECO:0000313|EMBL:EXU81295.1}; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Coma
bug; extra-cytoplasmic solute receptor protein
cn_combo_scaffold_51_24
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26654..27862)
DNA (1209bp) protein (403aa)
CoA transferase n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2IH08_9BURK
CoA-transferase III family protein {ECO:0000313|EMBL:KFJ13580.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovo
L-carnitine dehydratase/bile acid-inducible protein F
cn_combo_scaffold_51_25
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28020..28922
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WUU6_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD43186.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG
LysR family transcriptional regulator
cn_combo_scaffold_51_26
RIFOXYD12_FULL_Deltaproteobacteria_53_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29004..29258)
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI00037DA2E0
hypothetical protein Tax=RIFOXYD12_FULL_Deltaproteobacteria_53_23_curated
hypothetical protein
cn_combo_scaffold_51_27
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29536..30369
DNA (834bp) protein (278aa)
2-dehydropantoate 2-reductase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HJ86_9BRAD
Inositol monophosphatase {ECO:0000313|EMBL:KJC57133.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium s
suhB; putative inositol monophosphatase
cn_combo_scaffold_51_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30486..32429
DNA (1944bp) protein (648aa)
PAS/PAC sensor hybrid histidine kinase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6Z8_VARPE
Variovorax paradoxus strain MEDvA23 contig_65, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ25750.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
pas/pac sensor hybrid histidine kinase
cn_combo_scaffold_51_29
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32534..33034
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9C132_DELAS
Uncharacterized protein {ECO:0000313|EMBL:EZP55233.1}; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. RIT313.;"
hypothetical protein
cn_combo_scaffold_51_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33196..33579
DNA (384bp) protein (128aa)
Response regulator receiver n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6Z7_VARPE
response regulator receiver
Response regulator receiver {ECO:0000313|EMBL:ADU37201.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradox
Displaying items 1-30 of 204 in total

View Taxonomy