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cn_combo_scaffold_180

Alias: VAR87_15

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Displaying items 1-30 of 131 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_180_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..861)
DNA (861bp) protein (287aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V324_VARPE
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADU39163.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae;
cn_combo_scaffold_180_2
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

974..1243
DNA (270bp) protein (90aa)
ferredoxin n=1 Tax=Variovorax paradoxus RepID=UPI00035F388D
NADH:ubiquinone oxidoreductase chain I-like protein {ECO:0000313|EMBL:EJL73774.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" s
4fe-4S ferredoxin, iron-sulfur binding protein
cn_combo_scaffold_180_3
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1229..1678)
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000367142E
Uncharacterized protein {ECO:0000313|EMBL:EJL73773.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.
hypothetical protein
cn_combo_scaffold_180_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1775..2407)
DNA (633bp) protein (211aa)
peptidyL-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBa
Peptidyl-tRNA hydrolase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V281_VARPE
cn_combo_scaffold_180_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2486..3166)
DNA (681bp) protein (227aa)
50S ribosomal protein L25 n=1 Tax=Variovorax sp. CF313 RepID=J3CL60_9BURK
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; TaxID=1144315 s
rplY; 50S ribosomal protein L25
cn_combo_scaffold_180_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3253..4227)
DNA (975bp) protein (325aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosph
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
ribose-phosphate pyrophosphokinase n=1 Tax=Variovorax paradoxus RepID=UPI0003723520
cn_combo_scaffold_180_trna_5
unknown

Not on your lists

comp(4370..4443)
DNA (74bp)
transferRNA
cn_combo_scaffold_180_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4514..5410)
DNA (897bp) protein (299aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:M
4-diphosphocytidyL-2c-methyL-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Variovorax sp. CF313 RepID=J3CL38_9BURK
cn_combo_scaffold_180_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5407..5943)
DNA (537bp) protein (179aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI00037E9FD1
Outer-membrane lipoprotein LolB {ECO:0000256|SAAS:SAAS00002103}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax pa
outer membrane lipoprotein lolb
cn_combo_scaffold_180_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5946..7799)
DNA (1854bp) protein (618aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035C9EC5
hypothetical protein
Tetratricopeptide domain protein {ECO:0000313|EMBL:ADU39155.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" so
cn_combo_scaffold_180_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7881..8693
DNA (813bp) protein (271aa)
mutM; formamidopyrimidine-DNA glycosylase MutM (EC:3.2.2.23 4.2.99.18)
Formamidopyrimidine-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103, ECO:0000256|SAAS:SAAS00020852}; Short=Fapy-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103};; EC=3.2.2.23 {ECO:0000256|HAMAP-Rule
formamidopyrimidine-DNA glycosylase n=1 Tax=Variovorax paradoxus RepID=UPI000380CD25
cn_combo_scaffold_180_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8783..10744
DNA (1962bp) protein (654aa)
dynamin family protein n=1 Tax=Variovorax paradoxus RepID=UPI00037B06EF
Dynamin family protein {ECO:0000313|EMBL:EJL73765.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;
hypothetical protein
cn_combo_scaffold_180_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10773..11819
DNA (1047bp) protein (349aa)
A/G-specific adenine glycosylase n=1 Tax=Variovorax sp. CF313 RepID=J3CL35_9BURK
Variovorax paradoxus strain MEDvA23 contig_136, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ16102.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamon
a/g-specific adenine glycosylase
cn_combo_scaffold_180_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11826..12704)
DNA (879bp) protein (293aa)
glmZ(sRNA)-inactivating NTPase n=1 Tax=Variovorax paradoxus RepID=UPI00037A123A
Nucleotide-binding protein PMI12_03252 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Va
hypothetical protein
cn_combo_scaffold_180_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12701..14383)
DNA (1683bp) protein (561aa)
DNA repair protein RecN n=1 Tax=Variovorax sp. CF313 RepID=J2T6T3_9BURK
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Co
DNA repair protein recn
cn_combo_scaffold_180_15
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14385..15296)
DNA (912bp) protein (304aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Variovorax sp. CF313 RepID=J3CL55_9BURK
ATP-nad/acox kinase
cn_combo_scaffold_180_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15328..16335
DNA (1008bp) protein (336aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V269_VARPE
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source=
heat-inducible transcription repressor hrca
cn_combo_scaffold_180_trna_1
unknown

Not on your lists

16368..16441
DNA (74bp)
transferRNA
cn_combo_scaffold_180_17
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16477..18336)
DNA (1860bp) protein (620aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Acidovorax sp. CF316 RepID=J0KK71_9BURK
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EJE51583.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonada
sensor diguanylate cyclase
cn_combo_scaffold_180_18
Serratia sp. M24T3, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18709..19398
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Serratia sp. M24T3 RepID=I0QY34_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:EIC86207.1}; TaxID=932213 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia sp. M24T
hypothetical protein
cn_combo_scaffold_180_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19523..20722
DNA (1200bp) protein (400aa)
aldose sugar dehydrogenase YliI n=1 Tax=Variovorax paradoxus RepID=UPI00038222C8
putative soluble aldose sugar dehydrogenase
Putative soluble aldose sugar dehydrogenase {ECO:0000313|EMBL:AGU53343.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="V
cn_combo_scaffold_180_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20740..21555)
DNA (816bp) protein (272aa)
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC:4.1.3.39)
4-hydroxy-2-oxo-heptane-1,7-dioate aldolase HpcH {ECO:0000313|EMBL:AGU49187.1}; EC=4.1.2.52 {ECO:0000313|EMBL:AGU49187.1};; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkhol
4-hydroxy-2-oxo-heptane-1,7-dioate aldolase HpcH n=1 Tax=Variovorax paradoxus B4 RepID=T1X8D5_VARPD
cn_combo_scaffold_180_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21566..23035)
DNA (1470bp) protein (490aa)
succinic semialdehyde dehydrogenase (EC:1.2.1.24)
Succinic semialdehyde dehydrogenase {ECO:0000313|EMBL:ACS18598.1}; EC=1.2.1.24 {ECO:0000313|EMBL:ACS18598.1};; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Coma
Succinic semialdehyde dehydrogenase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CVE9_VARPS
cn_combo_scaffold_180_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23078..24601)
DNA (1524bp) protein (508aa)
altronate dehydratase (EC:4.2.1.7 4.2.1.42)
Altronate dehydratase {ECO:0000313|EMBL:AGU49189.1}; EC=4.2.1.42 {ECO:0000313|EMBL:AGU49189.1};; EC=4.2.1.7 {ECO:0000313|EMBL:AGU49189.1};; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteob
galactarate dehydratase n=1 Tax=Variovorax paradoxus RepID=UPI00035E7FD7
cn_combo_scaffold_180_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24626..25624)
DNA (999bp) protein (333aa)
Putative Bug-like extra cytoplasmic solute receptor, TTT family n=1 Tax=Variovorax paradoxus B4 RepID=T1XAK5_VARPD
putative Bug-like extra cytoplasmic solute receptor, TTT family
Putative Bug-like extra cytoplasmic solute receptor, TTT family {ECO:0000313|EMBL:AGU49190.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Var
cn_combo_scaffold_180_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25755..26690
DNA (936bp) protein (312aa)
Transcriptional regulator, LysR family n=1 Tax=Variovorax paradoxus B4 RepID=T1X9P3_VARPD
transcriptional regulator, LysR family
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AGU49191.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variov
cn_combo_scaffold_180_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26706..27671)
DNA (966bp) protein (322aa)
LacI family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI0003787444
Variovorax paradoxus strain MEDvA23 contig_110, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ19080.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamon
putative Bug-like extracytoplasmic solute binding receptor,TTT family rbh
cn_combo_scaffold_180_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27695..28570)
DNA (876bp) protein (292aa)
Putative TIM-barrel fold metal-dependent hydrolase n=1 Tax=Variovorax sp. CF313 RepID=J2K5W6_9BURK
Putative TIM-barrel fold metal-dependent hydrolase {ECO:0000313|EMBL:EJL75585.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" so
amidohydrolase 2
cn_combo_scaffold_180_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28574..29779)
DNA (1206bp) protein (402aa)
Putative acyl-CoA transferase n=1 Tax=Variovorax paradoxus B4 RepID=T1XFL1_VARPD
putative acyl-CoA transferase
Putative acyl-CoA transferase {ECO:0000313|EMBL:AGU51094.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax para
cn_combo_scaffold_180_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29794..30789)
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2TBS9_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL75587.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Va
hypothetical protein
Displaying items 1-30 of 131 in total

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