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cn_combo_scaffold_1132

Alias: VAR87_37

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Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_1132_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..85)
DNA (84bp) protein (28aa)
NAD(P)(+) transhydrogenase (AB-specific) {ECO:0000313|EMBL:ACS22611.1}; EC=1.6.1.2 {ECO:0000313|EMBL:ACS22611.1};; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
cn_combo_scaffold_1132_2
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(237..1220)
DNA (984bp) protein (328aa)
Transcriptional regulator, AraC family n=12 Tax=pseudomallei group RepID=A1V8L1_BURMS
helix-turn-helix domain protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:AIO87684.1}; TaxID=28450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;"
cn_combo_scaffold_1132_3
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1381..2721)
DNA (1341bp) protein (447aa)
Arabinose efflux permease family protein n=1 Tax=Variovorax sp. CF313 RepID=J2K3J9_9BURK
Arabinose efflux permease family protein {ECO:0000313|EMBL:EJL67838.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Vari
general substrate transporter
cn_combo_scaffold_1132_4
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2806..3411)
DNA (606bp) protein (202aa)
methyltransferase (EC:2.1.1.-)
SAM-dependent methyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI0003770211
Uncharacterized protein {ECO:0000313|EMBL:EJL67839.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.
cn_combo_scaffold_1132_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3429..4121)
DNA (693bp) protein (231aa)
Peroxiredoxin n=1 Tax=Variovorax sp. CF313 RepID=J2JIV8_9BURK
Peroxiredoxin {ECO:0000313|EMBL:EJL67840.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax s
putative alkyl hydroperoxide reductase/thiol-specific antioxidant
cn_combo_scaffold_1132_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4219..6450)
DNA (2232bp) protein (744aa)
protein-disulfide reductase (EC:1.8.1.8)
Thiol:disulfide interchange protein n=1 Tax=Variovorax sp. CF313 RepID=J3CAZ4_9BURK
Thiol:disulfide interchange protein {ECO:0000313|EMBL:EJL67841.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;
cn_combo_scaffold_1132_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6494..7267)
DNA (774bp) protein (258aa)
Putative metal-dependent hydrolase related to alanyl-tRNA synthetase HxxxH domain containing protein n=1 Tax=Variovorax sp. CF313 RepID=J2SQM0_9BURK
Putative metal-dependent hydrolase related to alanyl-tRNA synthetase HxxxH domain containing protein {ECO:0000313|EMBL:EJL67842.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria;
alanyL-tRNA synthetase, class iic-like protein
cn_combo_scaffold_1132_8
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7399..8772
DNA (1374bp) protein (458aa)
Glucose/sorbosone dehydrogenase n=1 Tax=Variovorax sp. CF313 RepID=J2K3K4_9BURK
Glucose/sorbosone dehydrogenase {ECO:0000313|EMBL:EJL67843.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" so
L-sorbosone dehydrogenase
cn_combo_scaffold_1132_9
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8789..9829)
DNA (1041bp) protein (347aa)
LacI family transcription regulator n=1 Tax=Comamonas testosteroni ATCC 11996 RepID=H1RKT0_COMTE
LacI family transcriptional regulator {ECO:0000313|EMBL:KGH29070.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas te
LacI family transcriptional regulator
cn_combo_scaffold_1132_10
Burkholderia jiangsuensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9978..11318
DNA (1341bp) protein (447aa)
nucleobase:cation symporter n=1 Tax=Rhizobium meliloti RepID=UPI0002E1F9B0
Nucleobase:cation symporter {ECO:0000313|EMBL:KAK49318.1}; TaxID=1458357 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia
xanthine/uracil/vitamin C permease
cn_combo_scaffold_1132_11
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11371..12798
DNA (1428bp) protein (476aa)
Uncharacterized protein n=1 Tax=Acinetobacter sp. CIP 64.2 RepID=N9N3A0_9GAMM
S-adenosylhomocysteine deaminase {ECO:0000313|EMBL:EWY41787.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skerma
putative membrane protein
cn_combo_scaffold_1132_12
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12795..13268
DNA (474bp) protein (158aa)
Uncharacterized protein n=2 Tax=Saccharopolyspora erythraea RepID=A4F7I3_SACEN
hypothetical protein
Permease {ECO:0000313|EMBL:EQD84275.1}; TaxID=1382595 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea D.;"
cn_combo_scaffold_1132_13
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13231..13473
DNA (243bp) protein (81aa)
permease n=1 Tax=Paracoccus sp. N5 RepID=UPI00036232ED
Permease {ECO:0000313|EMBL:KGJ02468.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus v
hypothetical protein
cn_combo_scaffold_1132_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13465..14043)
DNA (579bp) protein (193aa)
Acetyltransferase, ribosomal protein N-acetylase n=1 Tax=Variovorax sp. CF313 RepID=J3CAV0_9BURK
Acetyltransferase, ribosomal protein N-acetylase {ECO:0000313|EMBL:EJL67844.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae;
GCN5-like N-acetyltransferaser
cn_combo_scaffold_1132_15
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14118..14543
DNA (426bp) protein (142aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2JIW5_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EJL67845.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="
winged helix DNA-binding domain protein
cn_combo_scaffold_1132_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14549..16318
DNA (1770bp) protein (590aa)
Chloride channel protein EriC n=1 Tax=Variovorax sp. CF313 RepID=J3CAZ6_9BURK
Chloride channel protein EriC {ECO:0000313|EMBL:EJL67846.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" sour
Chloride channel core
cn_combo_scaffold_1132_17
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16320..17330)
DNA (1011bp) protein (337aa)
Zinc-binding alcohol dehydrogenase family protein n=1 Tax=Variovorax sp. CF313 RepID=J2SQM4_9BURK
Zinc-binding alcohol dehydrogenase family protein {ECO:0000313|EMBL:EJL67847.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" sou
zinc-binding alcohol dehydrogenase family protein
cn_combo_scaffold_1132_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17416..18324
DNA (909bp) protein (303aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2K3K9_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EJL67848.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="
LysR family transcriptional regulator
cn_combo_scaffold_1132_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18417..19214)
DNA (798bp) protein (266aa)
3-oxoacyl-ACP reductase n=1 Tax=Variovorax paradoxus RepID=UPI000367CE58
putative oxidoreductase, SDR family
Putative oxidoreductase, SDR family {ECO:0000313|EMBL:AGU47911.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovora
cn_combo_scaffold_1132_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19323..19907)
DNA (585bp) protein (195aa)
Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD n=1 Tax=Variovorax sp. CF313 RepID=J2JIW7_9BURK
Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD {ECO:0000313|EMBL:EJL67850.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Vari
PgdA-like protein
cn_combo_scaffold_1132_21
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19897..21174)
DNA (1278bp) protein (426aa)
pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase PgaC (EC:2.4.1.-)
N-glycosyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI00037A1838
Poly-beta-1,6 N-acetyl-D-glucosamine synthase {ECO:0000313|EMBL:EJL67851.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source=
cn_combo_scaffold_1132_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21171..23240)
DNA (2070bp) protein (690aa)
pgaB; poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB (EC:3.5.1.-)
Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB n=1 Tax=Variovorax sp. CF313 RepID=J2SQM8_9BURK
Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB {ECO:0000313|EMBL:EJL67852.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
cn_combo_scaffold_1132_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23240..25837)
DNA (2598bp) protein (866aa)
Poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA n=1 Tax=Variovorax sp. CF313 RepID=J2K3L6_9BURK
Poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA {ECO:0000313|EMBL:EJL67853.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonad
putative poly-beta-1,6-N-acetyl-D-glucosamine export porin PgaA
cn_combo_scaffold_1132_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26134..26964
DNA (831bp) protein (277aa)
creatininase n=1 Tax=Variovorax paradoxus RepID=UPI0003784D59
Variovorax paradoxus strain MEDvA23 contig_44, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ29624.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
creatininase
cn_combo_scaffold_1132_25
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26978..27949)
DNA (972bp) protein (324aa)
Threonine dehydratase n=1 Tax=Variovorax sp. CF313 RepID=J2JIX6_9BURK
Threonine dehydratase {ECO:0000313|EMBL:EJL67860.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
pyridoxaL-5'-phosphate-dependent protein beta subunit
cn_combo_scaffold_1132_26
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27971..28603)
DNA (633bp) protein (211aa)
Lysine exporter protein (LYSE/YGGA) n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V8J4_VARPE
Variovorax paradoxus strain MEDvA23 contig_44, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ29622.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
lysine exporter protein LysE/YggA
cn_combo_scaffold_1132_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28609..29301)
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2SQN8_9BURK
Variovorax paradoxus strain MEDvA23 contig_44, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ29621.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
hypothetical protein
cn_combo_scaffold_1132_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29317..30249)
DNA (933bp) protein (311aa)
Phenazine biosynthesis protein PhzF family n=1 Tax=Variovorax sp. CF313 RepID=J2K3M6_9BURK
Phenazine biosynthesis protein PhzF family {ECO:0000313|EMBL:EJL67863.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Va
phenazine biosynthesis protein phzf family
cn_combo_scaffold_1132_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30246..30887)
DNA (642bp) protein (214aa)
glutathione S-transferase n=1 Tax=Variovorax paradoxus RepID=UPI00037ED6A5
Variovorax paradoxus strain MEDvA23 contig_44, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ29619.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
glutathione s-transferase domain-containing protein
cn_combo_scaffold_1132_30
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30938..31774)
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000371C8B8
Phenazine biosynthesis family protein {ECO:0000313|EMBL:CDX26818.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mes
phenazine biosynthesis family protein
Displaying items 1-30 of 54 in total

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