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cn_combo_scaffold_192

Alias: VAR87_20

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Displaying items 1-30 of 170 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_192_1
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(453..2627)
DNA (2175bp) protein (725aa)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMA
1,4-alpha-glucan branching enzyme GlgB n=1 Tax=Variovorax sp. CF313 RepID=J3CF48_9BURK
1,4-alpha-glucan branching protein rbh
cn_combo_scaffold_192_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2633..4321)
DNA (1689bp) protein (563aa)
Glycosidase n=1 Tax=Variovorax sp. CF313 RepID=J2JQR4_9BURK
Variovorax paradoxus strain MEDvA23 contig_54, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ27451.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
alpha amylase catalytic subunit
cn_combo_scaffold_192_3
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4419..5489)
DNA (1071bp) protein (357aa)
Ketopantoate reductase (Fragment) n=1 Tax=Variovorax sp. CF313 RepID=J3CF45_9BURK
Ketopantoate reductase {ECO:0000313|EMBL:EJL70141.1}; Flags: Fragment;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Vari
putative NAD/NADP octopine/nopaline dehydrogenase
cn_combo_scaffold_192_4
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5482..6456)
DNA (975bp) protein (325aa)
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI0003716BE7
Uncharacterized protein {ECO:0000313|EMBL:EJL69884.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Va
hypothetical protein
cn_combo_scaffold_192_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6605..9235
DNA (2631bp) protein (877aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=34073 species="Bacteria; Proteoba
leucyl-tRNA synthetase n=1 Tax=Variovorax paradoxus RepID=UPI000374573B
leucyL-tRNA synthetase
cn_combo_scaffold_192_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9251..9787
DNA (537bp) protein (179aa)
Rare lipoprotein B n=1 Tax=Variovorax sp. CF313 RepID=J3CEJ6_9BURK
LPS-assembly lipoprotein LptE {ECO:0000256|HAMAP-Rule:MF_01186}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;"
lipopolysaccharide-assembly family protein
cn_combo_scaffold_192_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9795..10868
DNA (1074bp) protein (358aa)
DNA polymerase iii subunit delta (EC:2.7.7.7)
DNA polymerase III, delta subunit n=1 Tax=Variovorax sp. CF313 RepID=J2SW95_9BURK
DNA polymerase III, delta subunit {ECO:0000313|EMBL:EJL69887.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax
cn_combo_scaffold_192_8
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10939..12231
DNA (1293bp) protein (431aa)
Gamma-glutamyl phosphate reductase {ECO:0000256|HAMAP-Rule:MF_00412, ECO:0000256|SAAS:SAAS00054156}; Short=GPR {ECO:0000256|HAMAP-Rule:MF_00412};; EC=1.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00412, ECO:000
gamma-glutamyl phosphate reductase (EC:1.2.1.41)
Gamma-glutamyl phosphate reductase n=1 Tax=Variovorax sp. CF313 RepID=J2K9I9_9BURK
cn_combo_scaffold_192_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12355..13683
DNA (1329bp) protein (443aa)
glutamate--cysteine ligase n=1 Tax=Variovorax paradoxus RepID=UPI00037C74A7
Glutamate--cysteine ligase, ferrooxidans family {ECO:0000313|EMBL:EJL69889.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" sourc
glutamate/cysteine ligase
cn_combo_scaffold_192_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13768..15717
DNA (1950bp) protein (650aa)
potassium transporter Kup n=1 Tax=Variovorax paradoxus RepID=UPI00035EC37E
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadace
potassium transporter
cn_combo_scaffold_192_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15739..17016
DNA (1278bp) protein (426aa)
Putative benzoate transporter n=1 Tax=Variovorax paradoxus B4 RepID=T1X5D5_VARPD
Variovorax paradoxus strain MEDvA23 contig_54, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ27466.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
putative benzoate transporter
cn_combo_scaffold_192_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17016..17975
DNA (960bp) protein (320aa)
Glutathione synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; EC=6.3.2.3 {ECO:0000256|HAMAP-Rule:MF_00162};; GSH synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; Glutathione synthase {ECO:0000256|HAMAP-Rule:
glutathione synthetase (EC:6.3.2.3)
Glutathione synthetase n=1 Tax=Variovorax sp. CF313 RepID=J2K9J5_9BURK
cn_combo_scaffold_192_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17989..20205)
DNA (2217bp) protein (739aa)
TonB-denpendent receptor n=1 Tax=Variovorax paradoxus RepID=UPI00037E0C0F
TonB-dependent siderophore receptor {ECO:0000313|EMBL:AGU47644.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovora
TonB-dependent siderophore receptor
cn_combo_scaffold_192_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20322..21089)
DNA (768bp) protein (256aa)
Glutamine amidotransferase class-II n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V4D3_VARPE
glutamine amidotransferase class-ii
Glutamine amidotransferase class-II {ECO:0000313|EMBL:ADU34679.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax
cn_combo_scaffold_192_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21129..22274)
DNA (1146bp) protein (382aa)
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00035D46F0
Variovorax paradoxus strain MEDvA23 contig_54, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ27471.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
extracellular ligand-binding receptor
cn_combo_scaffold_192_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22352..23854)
DNA (1503bp) protein (501aa)
major facilitator transporter n=1 Tax=Variovorax paradoxus RepID=UPI000371AF29
Drug resistance transporter, EmrB/QacA subfamily {ECO:0000313|EMBL:EJL69896.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae;
EmrB/QacA subfamily drug resistance transporter
cn_combo_scaffold_192_17
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24001..25311
DNA (1311bp) protein (437aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2SWA6_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL69897.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.
hypothetical protein
cn_combo_scaffold_192_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25302..25544)
DNA (243bp) protein (81aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000369D422
Uncharacterized protein {ECO:0000313|EMBL:EJL69898.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.
hypothetical protein
cn_combo_scaffold_192_19
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25541..26806)
DNA (1266bp) protein (422aa)
Pyrophosphate--fructose 6-phosphate 1-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_01978}; EC=2.7.1.90 {ECO:0000256|HAMAP-Rule:MF_01978};; 6-phosphofructokinase, pyrophosphate dependent {ECO:0000256|
6-phosphofructokinase n=1 Tax=Variovorax paradoxus RepID=UPI00037CAC4A
phosphofructokinase
cn_combo_scaffold_192_20
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27776..28252
DNA (477bp) protein (159aa)
Sel1-like n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21Z03_RHOFD
Sel1-like protein
Sel1-like {ECO:0000313|EMBL:ABD69000.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATC
cn_combo_scaffold_192_21
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28457..29260)
DNA (804bp) protein (268aa)
Enoyl-CoA hydratase/carnithine racemase n=1 Tax=Variovorax sp. CF313 RepID=J2JPZ2_9BURK
Enoyl-CoA hydratase/carnithine racemase {ECO:0000313|EMBL:EJL69900.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Vario
enoyl-CoA hydratase/isomerase family protein
cn_combo_scaffold_192_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29266..30444)
DNA (1179bp) protein (393aa)
fadA1; 3-ketoacyl-CoA thiolase FadA (EC:2.3.1.16)
3-ketoacyl-CoA thiolase FadA {ECO:0000313|EMBL:AGU47653.1}; EC=2.3.1.16 {ECO:0000313|EMBL:AGU47653.1};; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonada
acetyl-CoA acetyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI0003616606
cn_combo_scaffold_192_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30580..30912)
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus B4 RepID=T1X5Q7_VARPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU47654.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus
cn_combo_scaffold_192_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30995..31921
DNA (927bp) protein (309aa)
Transcriptional regulator, LysR family n=1 Tax=Variovorax paradoxus B4 RepID=T1X679_VARPD
transcriptional regulator, LysR family
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AGU47655.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variov
cn_combo_scaffold_192_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31929..32507)
DNA (579bp) protein (193aa)
Secreted/surface protein with fasciclin-like repeats n=1 Tax=Variovorax sp. CF313 RepID=J2K9K5_9BURK
Variovorax paradoxus strain MEDvA23 contig_54, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ27477.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
beta-ig-h3/fasciclin
cn_combo_scaffold_192_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32923..33138
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CE97_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL69904.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Va
hypothetical protein
cn_combo_scaffold_192_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33117..34436)
DNA (1320bp) protein (440aa)
MFS transporter n=1 Tax=Variovorax paradoxus RepID=UPI00036A2704
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACS17113.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;"
cn_combo_scaffold_192_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34575..36749)
DNA (2175bp) protein (725aa)
Malate synthase G {ECO:0000256|HAMAP-Rule:MF_00641, ECO:0000256|RuleBase:RU003572}; EC=2.3.3.9 {ECO:0000256|HAMAP-Rule:MF_00641, ECO:0000256|RuleBase:RU003572};; TaxID=595537 species="Bacteria; Proteo
malate synthase g (EC:2.3.3.9)
Malate synthase G n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V4E7_VARPE
cn_combo_scaffold_192_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36955..37932
DNA (978bp) protein (326aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID
histidinol-phosphate aminotransferase n=1 Tax=Variovorax paradoxus RepID=UPI0003649EC3
histidinoL-phosphate aminotransferase
cn_combo_scaffold_192_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37989..38960
DNA (972bp) protein (324aa)
Candidate extracytoplasmic binding receptor n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y4L9_RAMTT
Variovorax paradoxus strain MEDvA23 contig_54, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ27483.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
tctC; extracytoplasmic binding receptor
Displaying items 1-30 of 170 in total

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