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cn_combo_scaffold_1118

Alias: VAR87_58

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Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_1118_1
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..160
DNA (159bp) protein (53aa)
Outer membrane protein (Porin) n=1 Tax=Variovorax sp. CF313 RepID=J3CB80_9BURK
Outer membrane protein (Porin) {ECO:0000313|EMBL:EJL68049.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" sou
porin
cn_combo_scaffold_1118_2
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(218..2494)
DNA (2277bp) protein (759aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
Signal transduction histidine kinase n=1 Tax=Polaromonas sp. CF318 RepID=J3CTG1_9BURK
integral membrane sensor signal transduction histidine kinase
cn_combo_scaffold_1118_3
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2676..3455
DNA (780bp) protein (260aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Polaromonas sp. CF318 RepID=J2TH72_9BURK
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:EJL77852.1}; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiale
transcriptional regulator
cn_combo_scaffold_1118_4
unknown

Not on your lists

3564..3761
DNA (198bp) protein (66aa)

This feature has no annotations

cn_combo_scaffold_1118_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3706..4389)
DNA (684bp) protein (228aa)
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Variovorax sp. CF313 RepID=J2JY83_9BURK
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain {ECO:0000313|EMBL:EJL72850.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderia
two component LuxR family transcriptional regulator
cn_combo_scaffold_1118_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4401..4859)
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037F2ACC
cn_combo_scaffold_1118_7
unknown

Not on your lists

comp(4875..5297)
DNA (423bp) protein (141aa)

This feature has no annotations

cn_combo_scaffold_1118_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5307..7502)
DNA (2196bp) protein (732aa)
TonB-dependent siderophor receptor n=1 Tax=Variovorax paradoxus B4 RepID=T1XEH6_VARPD
TonB-dependent siderophor receptor {ECO:0000313|EMBL:AGU50963.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax
TonB-dependent siderophor receptor
cn_combo_scaffold_1118_9
unknown

Not on your lists

comp(7599..7871)
DNA (273bp) protein (91aa)

This feature has no annotations

cn_combo_scaffold_1118_10
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7946..9748)
DNA (1803bp) protein (601aa)
Periplasmic sensor signal transduction histidine kinase 3 n=1 Tax=Achromobacter piechaudii HLE RepID=J4J6L2_9BURK
Periplasmic sensor signal transduction histidine kinase 3 {ECO:0000313|EMBL:EJO29124.1}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromoba
periplasmic sensor signal transduction histidine kinase 3
cn_combo_scaffold_1118_11
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9811..10566)
DNA (756bp) protein (252aa)
Response regulator 18 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HKM7_ACHXA
LuxR family transcriptional regulator {ECO:0000313|EMBL:KGY27995.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcali
response regulator 18
cn_combo_scaffold_1118_12
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(10762..12180)
DNA (1419bp) protein (473aa)
Uncharacterized protein n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NU32_GRAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEU38667.1}; TaxID=682795 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella mallensis (strain ATCC B
cn_combo_scaffold_1118_13
Burkholderia terrae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12255..13454)
DNA (1200bp) protein (400aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003617171
type VI secretion-associated protein, ImpA family
ImpA family type VI secretion-associated protein {ECO:0000313|EMBL:EIM98929.1}; TaxID=1171375 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;"
cn_combo_scaffold_1118_14
Burkholderia sp. BT03, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13454..17539)
DNA (4086bp) protein (1362aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000375EB84
ImcF-related, N-terminal domain containing protein {ECO:0000313|EMBL:EUC20032.1}; TaxID=1144309 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;
IcmF-like protein
cn_combo_scaffold_1118_15
Burkholderia sp. CCGE1002, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17598..18359)
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035C3E06
type IV / VI secretion system, DotU
Type IV / VI secretion system, DotU {ECO:0000313|EMBL:ADG19389.1}; TaxID=640511 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkho
cn_combo_scaffold_1118_16
Burkholderia terrae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18365..19687)
DNA (1323bp) protein (441aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036FF4DB
type VI secretion protein
Type VI secretion protein {ECO:0000313|EMBL:EIM98926.1}; TaxID=1171375 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia te
cn_combo_scaffold_1118_17
Ralstonia sp. GA3-3, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19708..20181)
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003808B35
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EON20031.1}; TaxID=1229514 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. GA3-3.
cn_combo_scaffold_1118_18
Burkholderia sp. CCGE1002, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20178..21647)
DNA (1470bp) protein (490aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036E5E03
sodium:dicarboxylate symporter
Sodium:dicarboxylate symporter {ECO:0000313|EMBL:ADG19386.1}; Flags: Precursor;; TaxID=640511 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;"
cn_combo_scaffold_1118_19
Burkholderia phymatum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21635..22369)
DNA (735bp) protein (245aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000365F0CF
aspartate racemase
Aspartate racemase {ECO:0000313|EMBL:ACC75054.1}; Flags: Precursor;; TaxID=391038 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burk
cn_combo_scaffold_1118_20
Burkholderia sp. BT03, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22383..23657)
DNA (1275bp) protein (425aa)
sodium:dicarboxylate symporter n=1 Tax=Variovorax paradoxus RepID=UPI00036B8C9E
sodium:dicarboxylate symporter
Sodium:dicarboxylate symporter {ECO:0000313|EMBL:EUC20026.1}; TaxID=1144309 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholder
cn_combo_scaffold_1118_21
Burkholderia sp. CCGE1002, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23681..24733)
DNA (1053bp) protein (351aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000374AF1C
family 3 extracellular solute-binding protein
Extracellular solute-binding protein family 3 {ECO:0000313|EMBL:ADG19383.1}; Flags: Precursor;; TaxID=640511 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; B
cn_combo_scaffold_1118_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24730..24912)
DNA (183bp) protein (61aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037FB126
cn_combo_scaffold_1118_23
Thiorhodococcus drewsii, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24976..25365)
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000367C287
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EGV30355.1}; TaxID=765913 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodoco
cn_combo_scaffold_1118_24
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25369..26043)
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037B9BB9
Uncharacterized protein {ECO:0000313|EMBL:ELX12956.1}; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobact
hypothetical protein
cn_combo_scaffold_1118_25
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26097..28037)
DNA (1941bp) protein (647aa)
type VI secretion protein Vgr n=1 Tax=Variovorax paradoxus RepID=UPI00037BEB3A
Type VI secretion system Vgr family protein {ECO:0000313|EMBL:ELX12955.1}; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;"
ImpA family type VI secretion-associated protein
cn_combo_scaffold_1118_26
Burkholderia phymatum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28043..30823)
DNA (2781bp) protein (927aa)
ATPase AAA n=1 Tax=Variovorax paradoxus RepID=UPI0003699A2B
Type VI secretion ATPase, ClpV1 family {ECO:0000313|EMBL:ACC75047.1}; TaxID=391038 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Bur
type VI secretion ATPase
cn_combo_scaffold_1118_27
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30798..31844)
DNA (1047bp) protein (349aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036A9F55
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ61093.1}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatub
cn_combo_scaffold_1118_28
Burkholderia sp. BT03, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31808..33619)
DNA (1812bp) protein (604aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003734CAF
Type VI secretion protein, VC_A0110 family {ECO:0000313|EMBL:EUC20018.1}; TaxID=1144309 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source
type VI secretion protein
cn_combo_scaffold_1118_29
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33621..34079)
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000364BF79
Type VI secretion protein, lysozyme-like protein {ECO:0000313|EMBL:ELX12951.1}; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacteriu
hypothetical protein
cn_combo_scaffold_1118_30
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34109..34591)
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036DF3D4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ61096.1}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatub
Displaying items 1-30 of 42 in total

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