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cn_combo_scaffold_1635

Alias: VAR87_61

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_1635_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..861)
DNA (861bp) protein (287aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V324_VARPE
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADU39163.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae;
cn_combo_scaffold_1635_2
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(901..1983)
DNA (1083bp) protein (361aa)
tartrate dehydrogenase (EC:4.1.1.73)
tartrate dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI00036AD9E2
Tartrate dehydrogenase {ECO:0000313|EMBL:EJL68980.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;
cn_combo_scaffold_1635_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2334..3803
DNA (1470bp) protein (490aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Vari
histidine kinase n=1 Tax=Variovorax paradoxus RepID=UPI00037370EB
integral membrane sensor signal transduction histidine kinase
cn_combo_scaffold_1635_4
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3868..4692
DNA (825bp) protein (275aa)
Aldo/keto reductase, diketogulonate reductase n=1 Tax=Variovorax sp. CF313 RepID=J3CCQ2_9BURK
Aldo/keto reductase, diketogulonate reductase {ECO:0000313|EMBL:EJL68979.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source=
aldo/keto reductase
cn_combo_scaffold_1635_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4703..6193)
DNA (1491bp) protein (497aa)
Xanthine permease n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CVQ2_VARPS
xanthine permease
Xanthine permease {ECO:0000313|EMBL:ACS20555.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain
cn_combo_scaffold_1635_6
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6345..7328)
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000363FC1B
NAD-dependent epimerase/dehydratase family protein
NAD-dependent epimerase/dehydratase family protein {ECO:0000313|EMBL:AGS23291.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacteri
cn_combo_scaffold_1635_7
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7395..9167)
DNA (1773bp) protein (591aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000380E137
diguanylate cyclase/phosphodiesterase Tax=GWA2_Burkholderiales_64_37_curated
diguanylate cyclase/phosphodiesterase
cn_combo_scaffold_1635_8
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9294..9854)
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036EC157
XRE family transcriptional regulator {ECO:0000313|EMBL:KEC74480.1}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhiz
hypothetical protein
cn_combo_scaffold_1635_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9864..10628)
DNA (765bp) protein (255aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J3CCQ0_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EJL68974.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="
transcriptional regulator, GntR family
cn_combo_scaffold_1635_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10643..11380)
DNA (738bp) protein (246aa)
hydantoin racemase (EC:5.1.99.5)
Asp/Glu racemase n=1 Tax=Variovorax paradoxus RepID=UPI00037A9321
Hydantoin racemase {ECO:0000313|EMBL:EJL68973.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
cn_combo_scaffold_1635_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11412..12905)
DNA (1494bp) protein (498aa)
Cytosine/uracil/thiamine/allantoin permease n=1 Tax=Variovorax sp. CF313 RepID=J2STQ8_9BURK
Cytosine/uracil/thiamine/allantoin permease {ECO:0000313|EMBL:EJL68972.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="V
cytosine/purines uracil thiamine allantoin permease
cn_combo_scaffold_1635_12
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13098..13841)
DNA (744bp) protein (248aa)
amino-acid transporter subunit ; ATP-binding component of ABC superfamily (EC:3.6.3.28)
Amino-acid transporter subunit ATP-binding component of ABC superfamily {ECO:0000313|EMBL:CBJ53290.1}; EC=3.6.3.28 {ECO:0000313|EMBL:CBJ53290.1};; TaxID=859656 species="Bacteria; Proteobacteria; Betap
sulfate ABC transporter ATP-binding protein n=1 Tax=Ralstonia solanacearum RepID=UPI0003089B45
cn_combo_scaffold_1635_13
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13838..14626)
DNA (789bp) protein (263aa)
Putative amino acid transmembrane ABC transporter protein n=1 Tax=Ralstonia solanacearum CMR15 RepID=D8NGT3_RALSL
putative amino acid transmembrane ABC transporter protein
Putative amino acid transmembrane ABC transporter protein {ECO:0000313|EMBL:CBJ40107.1}; TaxID=859655 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstoni
cn_combo_scaffold_1635_14
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14652..15416)
DNA (765bp) protein (255aa)
Glutamate/aspartate ABC transport protein high affinity periplasmic solute-binding protein n=2 Tax=Ralstonia solanacearum RepID=F6G8C8_RALS8
glutamate/aspartate ABC transport protein high affinity periplasmic solute-binding protein
Glutamate/aspartate ABC transport protein high affinity periplasmic solute-binding protein {ECO:0000313|EMBL:AEG70957.1}; TaxID=1031711 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholde
cn_combo_scaffold_1635_15
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15586..16008)
DNA (423bp) protein (141aa)
AsnC family transcriptional regulator n=1 Tax=Bordetella sp. FB-8 RepID=UPI00036EF69C
AsnC family transcriptional regulator {ECO:0000313|EMBL:GAE48684.1}; TaxID=1414836 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xan
AsnC family transcriptional regulator
cn_combo_scaffold_1635_16
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16149..17198
DNA (1050bp) protein (350aa)
Ornithine cyclodeaminase (EC:4.3.1.12) rbh
Probable ornithine cyclodeaminase protein {ECO:0000313|EMBL:CAD17634.1}; EC=4.3.1.12 {ECO:0000313|EMBL:CAD17634.1};; TaxID=267608 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales
Ornithine cyclodeaminase n=3 Tax=Ralstonia solanacearum RepID=M4ULD9_RALSL
cn_combo_scaffold_1635_17
Pseudomonas sp. GM55, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17225..18184
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. GM55 RepID=J3GTY0_9PSED
Uncharacterized protein {ECO:0000313|EMBL:EJM74952.1}; Flags: Precursor;; TaxID=1144333 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source
Amidinotransferase
cn_combo_scaffold_1635_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18241..18972)
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037804E0
two component transcriptional regulator, winged helix family
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:AGU51780.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variov
cn_combo_scaffold_1635_19
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19032..20963
DNA (1932bp) protein (644aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Me
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000374241D
ATPase domain-containing protein
cn_combo_scaffold_1635_20
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21344..22336
DNA (993bp) protein (331aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036688FC
two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ACA95898.1}; TaxID=406425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkh
cn_combo_scaffold_1635_21
Pseudomonas sp. 21, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22515..32051
DNA (9537bp) protein (3179aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003811C8F
Uncharacterized protein {ECO:0000313|EMBL:KJK03110.1}; TaxID=1619948 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 2
hypothetical protein
Displaying 21 items

View Taxonomy