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cn_combo_scaffold_345_29

Organism: CN-SCN_Variovorax_85x

near complete RP 50 / 55 MC: 2 BSCG 49 / 51 ASCG 14 / 38 MC: 2
Location: comp(29943..31199)

Top 3 Functional Annotations

Value Algorithm Source
HlyD family secretion protein n=1 Tax=Variovorax paradoxus RepID=UPI0003815534 similarity UNIREF
DB: UNIREF100
  • Identity: 84.8
  • Coverage: 408.0
  • Bit_score: 659
  • Evalue 2.10e-186
HlyD family type I secretion membrane fusion protein similarity KEGG
DB: KEGG
  • Identity: 77.9
  • Coverage: 384.0
  • Bit_score: 585
  • Evalue 1.10e-164
Type I secretion membrane fusion protein, HlyD family {ECO:0000313|EMBL:ADU39197.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 77.9
  • Coverage: 384.0
  • Bit_score: 585
  • Evalue 5.40e-164

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1257
ATGGCCATGCCTGACGCCATGCCCGACATCCCCCTCGGGCCGCCGCCCGCAACCCGGCAGGAGGGGGAGAAGAAGTCGAAGGAAGCCAAGGCCGCGCAGGGCCGCTACGCGCCCGTGGAGCCGCCGCTGCCGGGTGCCTCGCTGGTGGTGTGGATCGTGGCCGCGATGCTGGCGGCGCTGCTCGCGTGGGCGTGGTTCTTCAAGCTCGACGAGGTGTCCACCGGCACCGGCAAGGTGGTGCCGTCGTCGCGCGAGCAGATGATTCAGTCGCTCGAAGGCGGCATCCTGGTCGACCTGAAGGTGCGCGAGGGCGACATCGTGAGCGCGGGCCAGGTGCTTGCGCAGCTGGACCGCACCAAGACCGAATCGACCGTGCAGGAAAGCGCCTCGCGCGTGCGCGCCGCGCTGGCCATGTCGGCGCGCCTGACGGCCGAGGTCAACGGTACGCCGCTGGTGTTTCCGGACGAGGTGCGCGGCGAGCCCGGCCTGGTGCGCACCGAGACCGCGCTCTACCAGTCGCGCCGCGAGCAGCTCGCCAGCAGCCTGGCCGGCGTGAATCAGGCGCTGGTGCTGATGCGGCGCGAACTCGCGCTCACGGAGCCGCTGGTGTCGCGCGGCGCCGCGAGCGACGTGGAGGTGCTGCGCCTGAAGCGCCAGATCAACGAGGCCGAGACCAAGGCCGCCGACCTCAGGAGCCAGTACTACGTGAAGGCGCGCGAAGACCTCGCCAAGGCCAACGCCGAGATAGAGGCGCAGCGCTCGGTGACGCGCGGGCGTTCCGATTCGCTCACGCGGCTGACCTTCGCGTCGCCCGTGCGCGGCATCGTGAAAGACATCGTCGTGACCACCGTGGGCGGCGTGCTGCCGCCGGGCGGCAAGCTCATGGAGATCGTGCCGCTGGACGAGAAGCTGCTGGTGGAGGCACGCATCTCGCCGCGCGACGTGGCCTTCATCCACCCGGGGCAGGACGCGACGGTGAAGGTCACGGCCTACGACTACGCCATCTACGGCGGCCTGCCCGGCAAGGTGACGACCATCTCCCCCGACACCATCCAGGACGACGTGAAGCGCGACGTGTACTACTACCGCGTGTACATCCGCACCGACGCCGACCACCTGAAGAACAGGAGCGGGCGCAGCTTCCCCATCGTGCCCGGCATGATCGCCACGGTGGACATCCACACCGGCAGCAAGACCGTGCTGGACTACCTCATCAAGCCGCTGAACAAGGCGAGCGAGGCGCTGCGCGAGAGGTGA
PROTEIN sequence
Length: 419
MAMPDAMPDIPLGPPPATRQEGEKKSKEAKAAQGRYAPVEPPLPGASLVVWIVAAMLAALLAWAWFFKLDEVSTGTGKVVPSSREQMIQSLEGGILVDLKVREGDIVSAGQVLAQLDRTKTESTVQESASRVRAALAMSARLTAEVNGTPLVFPDEVRGEPGLVRTETALYQSRREQLASSLAGVNQALVLMRRELALTEPLVSRGAASDVEVLRLKRQINEAETKAADLRSQYYVKAREDLAKANAEIEAQRSVTRGRSDSLTRLTFASPVRGIVKDIVVTTVGGVLPPGGKLMEIVPLDEKLLVEARISPRDVAFIHPGQDATVKVTAYDYAIYGGLPGKVTTISPDTIQDDVKRDVYYYRVYIRTDADHLKNRSGRSFPIVPGMIATVDIHTGSKTVLDYLIKPLNKASEALRER*