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cn_combo_scaffold_10_5

Organism: CN-SCN_Variovorax_85x

near complete RP 50 / 55 MC: 2 BSCG 49 / 51 ASCG 14 / 38 MC: 2
Location: comp(3210..4190)

Top 3 Functional Annotations

Value Algorithm Source
Putative Bug-like extra-cytoplasmic solute receptor, TTT-family n=1 Tax=Variovorax paradoxus B4 RepID=T1XIJ9_VARPD similarity UNIREF
DB: UNIREF100
  • Identity: 83.2
  • Coverage: 327.0
  • Bit_score: 533
  • Evalue 1.40e-148
putative Bug-like extra-cytoplasmic solute receptor, TTT-family similarity KEGG
DB: KEGG
  • Identity: 83.2
  • Coverage: 327.0
  • Bit_score: 533
  • Evalue 3.80e-149
Putative Bug-like extra-cytoplasmic solute receptor, TTT-family {ECO:0000313|EMBL:AGU52712.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Var similarity UNIPROT
DB: UniProtKB
  • Identity: 83.2
  • Coverage: 327.0
  • Bit_score: 533
  • Evalue 1.90e-148

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 981
ATGAAATCCCTTTCCCGACGACTCGTGCTGGGCGTTGCCGCGCTGGCCGTGTCCGGCCATTTCGGCATCGCTGGCGCGGCCGACGCGTTCCCGTCCAAGCCCGTGAAGGTGCTCGTGGGCTACAGCGCAGGCGGCGCGGTCGATGCCATCGCGCGCTCCGTGGGGCTGAAGATGTCGGCCATCCTCGGGCAGCCGGTGATCGTCGAGAACAAGCCCGGCGCGGGCACCAACATCGCGATCAAGTCGGTCATCACCAGCCCGCCCGATGGCTACACGCTGCTGCTGGCAGCCAATGCACTGGCGGTGAACCCGTCGCTGTTCCAGCCCGCGCCCTACGACCTGGAGCGCGAGCTGACGCCGGTGGCATCGGTCGGCCGCGTGCCGGTGGTGTTCACGGTGCGCGAGGAATCCGCCATCAAGACGCTGCCCGAACTGGTCGCCGCGACCAAGGCCAAGCCTGGCGGAGTGACCGTCGCCACGCCAGGCAACGGATCGACACCGCACCTGGCCATGGAGCTCTTCCAGCACACCGCCGGCCTGCAACTTCGGCACGTGCCCTACAAGGGCGGCGCGCAGGCGCTCACCGACGTGCTCGGCGGCCATGTCGACGTGGTCGCGGTGAACGCGCTCGAGGCGCTGCCGCTCGCCAAGTCGGGCAAGCTGCGCGTGCTGGCGGTGATGAGCGCCGAGCGCTCCGCCGTGTTGCCCGGCGTGCCCACCGTGGCCGAGTCGGGCTATCCGGGGTTCGAGGCCAGCGTCTGGTATGGCTTCGTCGGGCCGGCCGGCCTGCCCAAGCCCGTGGTCGACAAGCTGCATGACGCGGTACAGAAAGCCATCGACTCGCCCGAGGTGCGGGCGCAGCTCGCGGCGGCCGGCGGCATTCCGCTGCCGGGGCCGACCGAGCAGTTCGCCACGCTGCTGAAGACCGACGTGGCGCGCTACGGCAAGCTGATCCGCGAAGCCGGCATCAAGCCCGATTGA
PROTEIN sequence
Length: 327
MKSLSRRLVLGVAALAVSGHFGIAGAADAFPSKPVKVLVGYSAGGAVDAIARSVGLKMSAILGQPVIVENKPGAGTNIAIKSVITSPPDGYTLLLAANALAVNPSLFQPAPYDLERELTPVASVGRVPVVFTVREESAIKTLPELVAATKAKPGGVTVATPGNGSTPHLAMELFQHTAGLQLRHVPYKGGAQALTDVLGGHVDVVAVNALEALPLAKSGKLRVLAVMSAERSAVLPGVPTVAESGYPGFEASVWYGFVGPAGLPKPVVDKLHDAVQKAIDSPEVRAQLAAAGGIPLPGPTEQFATLLKTDVARYGKLIREAGIKPD*