ggKbase home page

cn_combo_scaffold_10_14

Organism: CN-SCN_Variovorax_85x

near complete RP 50 / 55 MC: 2 BSCG 49 / 51 ASCG 14 / 38 MC: 2
Location: 12467..14365

Top 3 Functional Annotations

Value Algorithm Source
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB n=1 Tax=Variovorax sp. CF313 RepID=J3CJ90_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 86.0
  • Coverage: 635.0
  • Bit_score: 1086
  • Evalue 0.0
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB {ECO:0000313|EMBL:EJL72566.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Coma similarity UNIPROT
DB: UniProtKB
  • Identity: 86.0
  • Coverage: 635.0
  • Bit_score: 1086
  • Evalue 0.0
type II secretion system protein e similarity KEGG
DB: KEGG
  • Identity: 79.4
  • Coverage: 632.0
  • Bit_score: 990
  • Evalue 2.90e-286

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Variovorax sp. CF313 → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1899
ATGTCATCCACCGAAGTCACCTTGCCCGAGCAACTGCTGCGCGCACTCGAACTCCAGAGTCACGCGCCCGTCGCCCGAATCGGCGAAGCACTGGTTTCGCTGGGCATGGTCAGCGACGAGCAACTGCGCGAGGGCCTGGTCCGGCAGCGGCTCGAACCCCAGGTGCCGCTGGGCGAGATGCTGGTGCGCATGGGCGTGGTGAGCCACGGCCAGTTGCAGACCGCGCTGGTGCGCAAGATGGGTTATCCGCTGGTGAACCTGAATCTCTTTCCCGCGGCCGCCGATGCGCTGCGCAAGGTGGGCCACGGCGTGGCCCGGCGCCTGCAGGTCATGCCGCTGATGCTGCACCAGGGGCGGCTCGTCGTCGCGCTCGACGACCCGAGCAGCCGGCATTCGGCGCTCGAGGAGATCGAATTCATTGCGCAGATGAAGGTCACTCCGGTGGTGGGGCAATGCCTGGACCTCGACAGCGTGCTGGGCGCGGCCTACGAAAAAATCGGCGAGCCTTCCATCGGCATCTTCTCGACCAATGTGGACCCGGGGCGCCCGCTGGAGTTCGACCTGGCCGGCACCAGCGAACTGCTGCAGACCCTCGAGAAAGAAGGCCCTGCCTCCGCGCCCCCCGCCGAGGCACCCATCGAGCAGTCGGACAACTCGCTGGTGCGCATGATCAACAGCATGATCCTGGAGGCGCACCGCGAGGGCGCCTCGGACATCCACATCGAAAGCTACCCCGGCCAGGAAAAGACCCGCATCCGGTTTCGCCGCGACGGGCTGCTCTACACCTACCTGGAGCTACCGCCGAGCTATCGCAACGCGATCGTCGCGCGCGTGAAGATCATGTGCGACCTCGACATCAGCGAGAAGCGCAACCCGCAGGACGGCAAGATCAACTTCGCCAAGTACTCGCCGCAGCATCGCATCGAACTGCGCGTGGCGACCATCCCGACCAACAACGGCCTGGAAGACGTGGTGATGCGCATCCTGGCGTCCTCCAAGCCGATTCCGATGAGCGAGCTGGGCCTGTCGCCGAACAACCTCGCGCAGCTCACGAAGGCCGTCGAGCGGCCCTACGGCATGGTGTTGTGCGTCGGCCCCACCGGCTCGGGCAAGACCACCACGCTGCACTCGGCGCTGATGCAGATCAACACGCCAGAGCGAAAGATATGGACCGCGGAAGACCCGGTCGAAATCACCCAGCCCGGCCTGCGGCAGGTGCAGATCAATCCCCGCATCGACTGGACCTTCGCCAAGGCGCTGCGCGCCTTCGTGCGCGCGGACCCGGACGTCATCATGGTCGGCGAAATCCGCGACGAGGAAACCGCCAAGACCGCGATCGAGGCGTCGCTGACCGGCCACCTGGTGCTGTCGACCCTGCACACCAACAGCGCGCCCGAGACCGTGACGCGCCTGCTCGACATGGGCATGGACCCGTTCAACTTCGCGGACTCGCTGCTGGCGGTGCTGGCGCAGCGGCTGGTGCGTCGCCTGTGCAGCCGCTGCACCAGCAGCAGCCCGGCAAGCTCCGAGAGGATCGAGGAACTGCTGGACGACTACCTGCATGCCTTCGGCACCCGCGAGGACGACGCGGGCCGGCAGCGCAATGCGGTGCGCGACGTCTGGCTGCGCCGCTACGGGCGCGAGGGGCGGCTGCACGCCTACACCAGCGTCGGCTGCAAGCACTGCGGCGGCACGGGCTTCAAGGGGCGCGTGGGCATCCACGAACTCATGGTGATGTCCAAGACGCTGCGCCGCCTGGTGCAGACCGGCGCGCGCGCCGAAGAACTCCAGCTGGCGGCGCTGCAGGAGGGCATGCGCACGCTGCGCCAGGACGGCATCGAGAAAGTGCTGGCCGGACACACGACCGTGGAGGAAGTGCGCGCGACCAGCAATGTGTGA
PROTEIN sequence
Length: 633
MSSTEVTLPEQLLRALELQSHAPVARIGEALVSLGMVSDEQLREGLVRQRLEPQVPLGEMLVRMGVVSHGQLQTALVRKMGYPLVNLNLFPAAADALRKVGHGVARRLQVMPLMLHQGRLVVALDDPSSRHSALEEIEFIAQMKVTPVVGQCLDLDSVLGAAYEKIGEPSIGIFSTNVDPGRPLEFDLAGTSELLQTLEKEGPASAPPAEAPIEQSDNSLVRMINSMILEAHREGASDIHIESYPGQEKTRIRFRRDGLLYTYLELPPSYRNAIVARVKIMCDLDISEKRNPQDGKINFAKYSPQHRIELRVATIPTNNGLEDVVMRILASSKPIPMSELGLSPNNLAQLTKAVERPYGMVLCVGPTGSGKTTTLHSALMQINTPERKIWTAEDPVEITQPGLRQVQINPRIDWTFAKALRAFVRADPDVIMVGEIRDEETAKTAIEASLTGHLVLSTLHTNSAPETVTRLLDMGMDPFNFADSLLAVLAQRLVRRLCSRCTSSSPASSERIEELLDDYLHAFGTREDDAGRQRNAVRDVWLRRYGREGRLHAYTSVGCKHCGGTGFKGRVGIHELMVMSKTLRRLVQTGARAEELQLAALQEGMRTLRQDGIEKVLAGHTTVEEVRATSNV*