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cn_combo_scaffold_10_18

Organism: CN-SCN_Variovorax_85x

near complete RP 50 / 55 MC: 2 BSCG 49 / 51 ASCG 14 / 38 MC: 2
Location: comp(17417..18376)

Top 3 Functional Annotations

Value Algorithm Source
Trypsin-like serine protease with C-terminal PDZ domain containing protein n=1 Tax=Variovorax sp. CF313 RepID=J2KRD5_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 91.2
  • Coverage: 319.0
  • Bit_score: 569
  • Evalue 2.90e-159
Variovorax paradoxus strain MEDvA23 contig_70, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ25212.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona similarity UNIPROT
DB: UniProtKB
  • Identity: 91.8
  • Coverage: 319.0
  • Bit_score: 577
  • Evalue 1.10e-161
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain similarity KEGG
DB: KEGG
  • Identity: 50.3
  • Coverage: 308.0
  • Bit_score: 284
  • Evalue 4.00e-74

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 960
ATGGGCGCACGCGAAGACGAATTCCTGCTCGATTCCTACTCGGCCACCGTCACACGGGTGGCGCACACGGCCAGCGCGGCGGTCGCGCACATCAAGGTCCGAAAACAGCCCCAGCGCGGCAACGCGGGCGGCCAGGGCAGCGGCTCCGGCTTTCTCTTCACGCCGGACGGCTTCGCCATCACCAATGCCCATGTGGTCGAAGGCGCGAGCGAGCTGCGCGCAGCCTTTTCGGACGGCACCGAGAGCCCGGCGCGCCTGGTCGGCATCGACGCCTCGACCGACGTGGCGGTGCTGCGCATCGAGTCGCACACCAGCGCCTTCCTGCCGCTGGGCAGTTCCGCGGCGCTGCAGCCCGGCCAGCTGGCCGTGGCGGTCGGCAATCCGCTGGGTTTCGACTTCACCGTGACCGCCGGCATCGTGAGCGCGCTGGGCCGCAGCCTGCCTTCGCGCGGCGGCCGGATGATCGAGGACGTGATCCAGACCGACGTGGCGCTGAACCCCGGCAATTCGGGCGGACCGCTGCTCGACAGCGCCGCGCAGGTCATCGGCGTGAACACGGCGGTGATTCCGTCGGCCCAGGGCCTGAGCTTTGCGGTGGCCATCGACACCGCGCGCTGGGTGGCCGGGGAGCTGATGCGCCACGGCGCGGTGCGGCGCGGCAAGCTGGGCGTGCAGTGCGCGGCGATGGCCCTGCCCCGGCGCTGGGTGCGCGAAAACGAATGGTCCGTCGGCACCGGCCTGCGGGTGGTCGAGGTGGTGGCCGGCTCGGCGGCGGCGCGCGACGGGCTGCGCAGCGGCGACATCCTCATCGGCTGCGACGGAACGCCGCTGGCGCAGCTGTCTGACCTGCTCAAGCGCCTGGCCGGCGAAGGCTACGGACGGCCGCTGCTGCTGAAGCTGCTGCGCCCGGTGGCCGGCACGCTGACGACGCTTTACCTGACGGTGGCGCCGGGGGGTTGA
PROTEIN sequence
Length: 320
MGAREDEFLLDSYSATVTRVAHTASAAVAHIKVRKQPQRGNAGGQGSGSGFLFTPDGFAITNAHVVEGASELRAAFSDGTESPARLVGIDASTDVAVLRIESHTSAFLPLGSSAALQPGQLAVAVGNPLGFDFTVTAGIVSALGRSLPSRGGRMIEDVIQTDVALNPGNSGGPLLDSAAQVIGVNTAVIPSAQGLSFAVAIDTARWVAGELMRHGAVRRGKLGVQCAAMALPRRWVRENEWSVGTGLRVVEVVAGSAAARDGLRSGDILIGCDGTPLAQLSDLLKRLAGEGYGRPLLLKLLRPVAGTLTTLYLTVAPGG*