ggKbase home page

cn_combo_scaffold_1607_14

Organism: CN-SCN_Xanthomonadaceae_48x

partial RP 7 / 55 MC: 5 BSCG 10 / 51 MC: 6 ASCG 6 / 38 MC: 3
Location: comp(12196..12768)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma24 factor {ECO:0000313|EMBL:KGM54679.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter d similarity UNIPROT
DB: UniProtKB
  • Identity: 70.7
  • Coverage: 188.0
  • Bit_score: 257
  • Evalue 1.50e-65
Sigma-70 family RNA polymerase sigma factor id=3013681 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=unknown taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 68.2
  • Coverage: 195.0
  • Bit_score: 245
  • Evalue 3.30e-62
RNA polymerase ECF-type sigma factor similarity KEGG
DB: KEGG
  • Identity: 59.8
  • Coverage: 194.0
  • Bit_score: 212
  • Evalue 1.50e-52

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Lysobacter daejeonensis → Lysobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 573
ATGCTGATGCAGACCATGCCGCTACCGCAGGCCACTGAATCCGACGACGACGCCGGATTGGCGCGGCGCGCGGCCCGCGCCGACGTGTCTGCATTCGAGCAGCTCTACCGCCGCCACCACCGCCGCGTGCATGGGGTGATCGTGCGGCTGGTGGGGCAGGCGGGGACGCGTGCGGAGGACCTCACCCAGGAGGCCTTCGTGCGCGCCTGGCAGGCGCTGCCGGCCTTCCGCTTCGAGAGCGCGGTATCGACCTGGCTGCATCGCCTGGCGGTCAATACCGCGCTGATGGAGATGCGGGCGCGTCGCAGCCGGTCGTGGCCGGAAGAGGACGATGACGCGCTGGAAACGGTGGCAACCCCGGATACCGCCGGCCGTGCCGTGCTCGGCCGCGACCTGGAGCGTGCGGTCGCGAGCCTGCCGTCGCGCGCGCGCGCGGTGCTGGTGTTGCACGACGTAGAAGGCTGGAAGCACGAGGAAATCGCGGGCGAGCTTGGCATGGCGGTGGGAAGTTCGAAGGCGCAGTTGCATCGCGCGCGCGGACTGCTGCGCGCGCGGATCGGAGAAATGGCATGA
PROTEIN sequence
Length: 191
MLMQTMPLPQATESDDDAGLARRAARADVSAFEQLYRRHHRRVHGVIVRLVGQAGTRAEDLTQEAFVRAWQALPAFRFESAVSTWLHRLAVNTALMEMRARRSRSWPEEDDDALETVATPDTAGRAVLGRDLERAVASLPSRARAVLVLHDVEGWKHEEIAGELGMAVGSSKAQLHRARGLLRARIGEMA*