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CN-SCN_Xanthomonadaceae_48x

CN-SCN_Xanthomonadales_69_49
In projects: CN-SCN

Consensus taxonomy: Xanthomonadales  →  Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 49.15 Longest contig: 56.08 Kbp Bin length: 3.65 Mbp GC content: 68.82 %
Contigs count: 344 Features count: 3771 rRNAs count: 0 tRNAs count: 44

Genome completeness

partial RP 7 / 55 MC: 5 BSCG 10 / 51 MC: 6 ASCG 6 / 38 MC: 3

Description

Partial double 6 and 6

Displaying items 1-50 of 344 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_952 XAN48_2
Order: Xanthomonadales (57.35%)
68 50883 bp 69.05 46.25 96.86
cn_combo_scaffold_3820 XAN48_343b
Genus: Lysobacter (54.9%)
51 56078 bp 68.06 82.27 89.07
cn_combo_scaffold_3212 XAN48_30
Order: Xanthomonadales (74.42%)
43 38978 bp 69.35 50.68 91.93
cn_combo_scaffold_1420 XAN48_3
Order: Xanthomonadales (78.05%)
41 36368 bp 69.21 48.78 90.62
cn_combo_scaffold_3227 XAN48_32
Order: Xanthomonadales (88.89%)
36 34742 bp 67.20 48.07 91.43
cn_combo_scaffold_2704 XAN48_16
Species: Pseudoxanthomonas suwonensis (50%)
30 26347 bp 66.39 55.78 87.96
cn_combo_scaffold_3032 XAN48_22
Order: Xanthomonadales (60%)
30 28891 bp 70.90 49.85 85.84
cn_combo_scaffold_3478 XAN48_340a
Order: Xanthomonadales (55.17%)
29 22937 bp 69.14 47.63 83.90
cn_combo_scaffold_1971 XAN48_7
Order: Xanthomonadales (60.71%)
28 27681 bp 65.40 50.93 95.22
cn_combo_scaffold_3917 XAN48_42
Class: Gammaproteobacteria (57.14%)
28 26056 bp 63.23 46.92 94.50
cn_combo_scaffold_4866 XAN48_62
Order: Xanthomonadales (85.71%)
28 23254 bp 70.02 51.46 93.81
cn_combo_scaffold_2171 XAN48_10
Order: Xanthomonadales (80.77%)
26 25155 bp 69.70 48.78 94.44
cn_combo_scaffold_1607 XAN48_4
Order: Xanthomonadales (76%)
25 33192 bp 66.40 48.39 93.68
cn_combo_scaffold_1845 XAN48_6
Order: Xanthomonadales (84%)
25 29369 bp 65.40 52.36 95.98
cn_combo_scaffold_2163 XAN48_9
Order: Xanthomonadales (76%)
25 25248 bp 70.45 52.18 92.82
cn_combo_scaffold_3121 XAN48_26
Order: Xanthomonadales (68%)
25 29010 bp 59.39 49.79 94.44
cn_combo_scaffold_4066 XAN48_45
Genus: Lysobacter (60%)
25 21807 bp 68.76 50.08 93.89
cn_combo_scaffold_2635 XAN48_13
Phylum: Proteobacteria (62.5%)
24 21221 bp 67.75 33.87 95.20
cn_combo_scaffold_4339 XAN48_53
Order: Xanthomonadales (58.33%)
24 23082 bp 69.09 46.69 89.04
cn_combo_scaffold_4435 XAN48_55
Genus: Lysobacter (62.5%)
24 21269 bp 70.13 54.24 93.05
cn_combo_scaffold_4891 XAN48_64
Class: Gammaproteobacteria (50%)
24 19081 bp 63.96 32.81 90.07
cn_combo_scaffold_1609 XAN48_5
Class: Gammaproteobacteria (60.87%)
23 32426 bp 66.01 51.66 91.92
cn_combo_scaffold_4436 XAN48_56
Genus: Arenimonas (60.87%)
23 25303 bp 67.83 56.62 94.14
cn_combo_scaffold_5177 XAN48_80
Order: Xanthomonadales (73.91%)
23 20856 bp 72.28 49.81 86.36
cn_combo_scaffold_3066 XAN48_23
Genus: Lysobacter (50%)
22 18528 bp 72.45 48.48 95.25
cn_combo_scaffold_3153 XAN48_27
Order: Xanthomonadales (68.18%)
22 18100 bp 73.64 50.91 95.28
cn_combo_scaffold_5417 XAN48_83
Genus: Lysobacter (50%)
22 15297 bp 69.05 50.26 80.84
cn_combo_scaffold_3015 XAN48_21
Order: Xanthomonadales (57.14%)
21 18787 bp 65.97 50.43 89.28
cn_combo_scaffold_3080 XAN48_25
Genus: Lysobacter (52.38%)
21 20984 bp 70.72 48.58 93.26
cn_combo_scaffold_4175 XAN48_48
Order: Xanthomonadales (52.38%)
21 24214 bp 65.13 22.60 87.89
cn_combo_scaffold_5592 XAN48_88
Order: Xanthomonadales (75%)
20 14809 bp 70.36 49.23 94.92
cn_combo_scaffold_2692 XAN48_15
Genus: Lysobacter (57.89%)
19 20837 bp 68.33 48.66 94.00
cn_combo_scaffold_3120 XAN48_24
Genus: Lysobacter (63.16%)
19 18264 bp 68.57 49.47 93.68
cn_combo_scaffold_3164 XAN48_28
Order: Xanthomonadales (63.16%)
19 18029 bp 62.75 44.02 93.70
cn_combo_scaffold_3320 XAN48_33
Order: Xanthomonadales (52.63%)
19 17928 bp 62.73 49.41 83.15
cn_combo_scaffold_4290 XAN48_51
Order: Xanthomonadales (73.68%)
19 13656 bp 68.63 51.93 90.38
cn_combo_scaffold_5603 XAN48_90
Order: Xanthomonadales (57.89%)
19 12104 bp 70.33 52.78 94.11
cn_combo_scaffold_9230 XAN48_189
Order: Xanthomonadales (84.21%)
19 14597 bp 70.24 51.96 90.61
cn_combo_scaffold_2526 XAN48_12
Order: Xanthomonadales (94.44%)
18 21932 bp 70.85 46.79 93.38
cn_combo_scaffold_11862 XAN48_276
Genus: Lysobacter (61.11%)
18 12979 bp 69.86 56.04 86.86
cn_combo_scaffold_4882 XAN48_63
Genus: Lysobacter (50%)
18 14253 bp 70.85 59.83 86.40
cn_combo_scaffold_9442 XAN48_194
Genus: Lysobacter (55.56%)
18 13677 bp 70.01 63.19 96.12
cn_combo_scaffold_2082 XAN48_8
Order: Xanthomonadales (70.59%)
17 26316 bp 68.25 55.60 90.94
cn_combo_scaffold_2507 XAN48_11
Order: Xanthomonadales (94.12%)
17 22043 bp 71.51 50.40 91.92
cn_combo_scaffold_3189 XAN48_29
Genus: Lysobacter (70.59%)
17 17886 bp 72.65 52.25 95.49
cn_combo_scaffold_3241 XAN48_31
Order: Xanthomonadales (58.82%)
17 17635 bp 70.93 57.23 92.12
cn_combo_scaffold_3714 XAN48_35
Genus: Lysobacter (64.71%)
17 18128 bp 71.61 50.51 95.97
cn_combo_scaffold_6365 XAN48_113
Species: Xanthomonas euvesicatoria (64.71%)
17 14406 bp 61.27 10.80 94.00
cn_combo_scaffold_2690 XAN48_14
Order: Xanthomonadales (87.5%)
16 20876 bp 70.04 53.44 95.56
cn_combo_scaffold_2714 XAN48_17
Order: Xanthomonadales (75%)
16 20673 bp 69.31 47.60 96.84
Displaying items 1-50 of 344 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.