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cn_combo_scaffold_2082

Alias: XAN48_8

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_2082_1
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..505
DNA (504bp) protein (168aa)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Rhodanobacter denitrificans RepID=I4WW40_9GAMM
N-acetylmuramoyl-L-alanine amidase
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:AHX14185.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jian
cn_combo_scaffold_2082_2
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(968..3925)
DNA (2958bp) protein (986aa)
collagenase (EC:3.4.24.3) rbh
Microbial collagenase n=1 Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2AQQ5_STRRD
Protease {ECO:0000313|EMBL:EYR68143.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
cn_combo_scaffold_2082_3
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4148..4795
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HFN5_9SPHN
GntR family transcriptional regulator {ECO:0000313|EMBL:EYR68142.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lyso
GntR family transcriptional regulator
cn_combo_scaffold_2082_4
Shewanella piezotolerans, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5045..7879
DNA (2835bp) protein (945aa)
Outer membrane receptor protein, mostly Fe transport n=1 Tax=Shewanella piezotolerans (strain WP3 / JCM 13877) RepID=B8CVT6_SHEPW
outer membrane receptor protein rbh
Outer membrane receptor protein, mostly Fe transport {ECO:0000313|EMBL:ACJ31762.1}; TaxID=225849 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;"
cn_combo_scaffold_2082_5
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8057..8938)
DNA (882bp) protein (294aa)
Membrane protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R0Q5_BREDI
Membrane protein {ECO:0000313|EMBL:EGF94184.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta
protein of unknown function DUF81
cn_combo_scaffold_2082_6
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(8982..10268)
DNA (1287bp) protein (429aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002D3F9E9
putative class-III aminotransferase
Putative class-III aminotransferase {ECO:0000313|EMBL:BAM00394.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (
cn_combo_scaffold_2082_7
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10307..11287)
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI00030DCB25
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIF48469.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
cn_combo_scaffold_2082_8
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11284..13620)
DNA (2337bp) protein (779aa)
peptidase n=1 Tax=Xanthomonas sacchari RepID=UPI00026307E5
peptidase S9 rbh
Peptidase S9 {ECO:0000313|EMBL:AJC45280.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
cn_combo_scaffold_2082_9
Xanthomonas alfalfae, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13675..14901)
DNA (1227bp) protein (409aa)
Xaa-Pro aminopeptidase n=1 Tax=Xanthomonas axonopodis pv. citrumelo F1 RepID=G2LWM3_9XANT
Xaa-Pro aminopeptidase rbh
Xaa-Pro aminopeptidase {ECO:0000313|EMBL:AEO42785.1}; TaxID=981368 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopo
cn_combo_scaffold_2082_10
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15115..18201)
DNA (3087bp) protein (1029aa)
Putative tonb-dependent outer membrane receptor oar-like protein n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2U9K0_XANAP
NODE_28, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ96674.1}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lys
TonB-dependent outer membrane receptor oar-like protein
cn_combo_scaffold_2082_11
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18619..19860)
DNA (1242bp) protein (414aa)
dadA; putative D-amino-acid dehydrogenase; K00285 D-amino-acid dehydrogenase [EC:1.4.99.1] Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
FAD-dependent oxidoreductase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B5F9EC
FAD-dependent oxidoreductase
cn_combo_scaffold_2082_12
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19956..20672)
DNA (717bp) protein (239aa)
Transcriptional regulator transcription regulator protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VKX5_9GAMM
Transcriptional regulator transcription regulator protein {ECO:0000313|EMBL:EIL87866.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodan
AraC family transcriptional regulator
cn_combo_scaffold_2082_13
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20779..21723
DNA (945bp) protein (315aa)
Proline racemase {ECO:0000313|EMBL:CCP39098.1}; EC=5.1.1.4 {ECO:0000313|EMBL:CCP39098.1};; TaxID=1261556 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xant
hydroxyproline-2-epimerase n=1 Tax=Xanthomonas sacchari RepID=UPI00026309F2
hydroxyproline-2-epimerase
cn_combo_scaffold_2082_14
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21766..22671
DNA (906bp) protein (302aa)
dihydrodipicolinate synthetase n=1 Tax=Xanthomonas sacchari RepID=UPI00026307EB
dihydrodipicolinate synthetase
Dihydrodipicolinate synthetase {ECO:0000313|EMBL:AHX14138.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangnin
cn_combo_scaffold_2082_15
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22815..24392
DNA (1578bp) protein (526aa)
ketoglutarate semialdehyde dehydrogenase n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI000380CFD1
ketoglutarate semialdehyde dehydrogenase
Ketoglutarate semialdehyde dehydrogenase {ECO:0000313|EMBL:AJC45285.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xa
cn_combo_scaffold_2082_16
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24526..25566
DNA (1041bp) protein (347aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae;
Two-component sensor NtrB n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L3E5_9GAMM
signal transduction histidine kinase, nitrogen specific, NtrB
cn_combo_scaffold_2082_17
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25559..26314
DNA (756bp) protein (252aa)
Nitrogen metabolism transcriptional regulator, NtrC, Fis Family id=2624634 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=unknown taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
glnG; putative nitrogen regulation protein NR(I); K07712 two-component system, NtrC family, nitrogen regulation response regulator GlnG Tax=GWF1_Xanthomonadales_69_6_curated
ntrC; two-component system regulatory protein
Displaying 17 items

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