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CN-SCN_Xanthomonadaceae_48x

CN-SCN_Xanthomonadales_69_49
In projects: CN-SCN

Consensus taxonomy: Xanthomonadales  →  Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 49.15 Longest contig: 56.08 Kbp Bin length: 3.65 Mbp GC content: 68.82 %
Contigs count: 344 Features count: 3771 rRNAs count: 0 tRNAs count: 44

Genome completeness

partial RP 7 / 55 MC: 5 BSCG 10 / 51 MC: 6 ASCG 6 / 38 MC: 3

Description

Partial double 6 and 6

Displaying items 51-100 of 344 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_4176 XAN48_49
Order: Xanthomonadales (81.25%)
16 16244 bp 67.85 59.28 94.72
cn_combo_scaffold_4508 XAN48_57
Order: Xanthomonadales (62.5%)
16 13023 bp 67.72 54.48 90.72
cn_combo_scaffold_5230 XAN48_342a
Order: Xanthomonadales (53.33%)
15 11272 bp 69.42 53.42 87.85
cn_combo_scaffold_5482 XAN48_343a
Order: Xanthomonadales (66.67%)
15 10848 bp 68.68 47.18 89.63
cn_combo_scaffold_11905 XAN48_279
Genus: Lysobacter (60%)
15 10291 bp 68.95 52.02 88.88
cn_combo_scaffold_3327 XAN48_34
Order: Xanthomonadales (60%)
15 17247 bp 68.44 57.31 93.59
cn_combo_scaffold_4198 XAN48_50
Genus: Lysobacter (53.33%)
15 13927 bp 71.98 53.42 95.28
cn_combo_scaffold_4430 XAN48_54
Class: Gammaproteobacteria (73.33%)
15 13221 bp 69.56 53.90 93.49
cn_combo_scaffold_4577 XAN48_58
Order: Xanthomonadales (80%)
15 12849 bp 69.14 45.91 95.35
cn_combo_scaffold_4697 XAN48_60
Order: Xanthomonadales (73.33%)
15 12521 bp 71.36 54.18 95.50
cn_combo_scaffold_7112 XAN48_128
Species: Xanthomonas euvesicatoria (66.67%)
15 12605 bp 63.59 10.94 94.89
cn_combo_scaffold_8201 XAN48_162
Genus: Lysobacter (53.33%)
15 12723 bp 71.52 48.71 95.26
cn_combo_scaffold_2712 XAN48_18
Order: Xanthomonadales (71.43%)
14 20685 bp 70.18 47.80 98.14
cn_combo_scaffold_3846 XAN48_37
Order: Xanthomonadales (85.71%)
14 15100 bp 64.97 45.09 92.28
cn_combo_scaffold_3866 XAN48_38
Class: Gammaproteobacteria (64.29%)
14 15011 bp 67.04 47.75 94.69
cn_combo_scaffold_3875 XAN48_39
Genus: Lysobacter (50%)
14 14980 bp 68.52 48.71 93.48
cn_combo_scaffold_3913 XAN48_40
Order: Xanthomonadales (78.57%)
14 14865 bp 72.13 49.39 93.22
cn_combo_scaffold_3919 XAN48_41
Genus: Lysobacter (71.43%)
14 16017 bp 69.66 53.50 91.03
cn_combo_scaffold_4787 XAN48_61
Genus: Lysobacter (50%)
14 12300 bp 70.41 51.07 94.71
cn_combo_scaffold_5136 XAN48_75
Order: Xanthomonadales (57.14%)
14 11985 bp 67.48 52.72 90.89
cn_combo_scaffold_5692 XAN48_93
Order: Xanthomonadales (78.57%)
14 10488 bp 69.77 51.87 94.08
cn_combo_scaffold_7494 XAN48_141
Order: Xanthomonadales (64.29%)
14 17439 bp 70.74 54.43 90.25
cn_combo_scaffold_10066 XAN48_218
Genus: Lysobacter (69.23%)
13 12425 bp 68.85 55.46 86.80
cn_combo_scaffold_10893 XAN48_241
Order: Xanthomonadales (61.54%)
13 11020 bp 70.45 62.51 94.82
cn_combo_scaffold_12984 XAN48_310
Order: Xanthomonadales (53.85%)
13 12625 bp 70.37 46.61 90.68
cn_combo_scaffold_4927 XAN48_65
Order: Xanthomonadales (76.92%)
13 11924 bp 71.69 52.76 98.80
cn_combo_scaffold_16268 XAN48_329
Class: Gammaproteobacteria (84.62%)
13 10936 bp 69.18 49.37 90.61
cn_combo_scaffold_5085 XAN48_74
Order: Xanthomonadales (53.85%)
13 11585 bp 57.10 42.70 90.92
cn_combo_scaffold_5606 XAN48_89
Order: Xanthomonadales (61.54%)
13 10634 bp 70.27 48.28 87.31
cn_combo_scaffold_5675 XAN48_92
Order: Xanthomonadales (92.31%)
13 15087 bp 69.30 49.63 91.53
cn_combo_scaffold_5920 XAN48_99
Genus: Lysobacter (61.54%)
13 10122 bp 69.32 55.08 94.44
cn_combo_scaffold_5971 XAN48_100
Genus: Lysobacter (61.54%)
13 11647 bp 71.42 53.03 93.04
cn_combo_scaffold_6068 XAN48_105
Genus: Lysobacter (53.85%)
13 9907 bp 67.79 45.96 91.48
cn_combo_scaffold_6543 XAN48_118
Genus: Lysobacter (69.23%)
13 9254 bp 69.93 46.67 95.18
cn_combo_scaffold_6903 XAN48_127
Order: Xanthomonadales (76.92%)
13 15928 bp 71.75 53.06 92.00
cn_combo_scaffold_7144 XAN48_131
Order: Xanthomonadales (76.92%)
13 15603 bp 70.86 48.90 93.37
cn_combo_scaffold_8307 XAN48_165
Genus: Lysobacter (53.85%)
13 10570 bp 72.41 48.61 98.71
cn_combo_scaffold_9527 XAN48_199
Genus: Lysobacter (76.92%)
13 11718 bp 69.71 46.89 94.98
cn_combo_scaffold_2844 XAN48_19
Genus: Lysobacter (58.33%)
12 19809 bp 72.24 52.63 97.03
cn_combo_scaffold_3962 XAN48_43
Order: Xanthomonadales (75%)
12 14743 bp 68.26 50.80 93.23
cn_combo_scaffold_5056 XAN48_73
Order: Xanthomonadales (58.33%)
12 11656 bp 69.89 51.71 83.67
cn_combo_scaffold_5176 XAN48_79
Species: Xanthomonas vesicatoria (50%)
12 11385 bp 63.08 31.08 95.15
cn_combo_scaffold_5224 XAN48_81
Genus: Lysobacter (66.67%)
12 11286 bp 70.13 51.64 92.26
cn_combo_scaffold_5362 XAN48_82
Order: Xanthomonadales (58.33%)
12 11040 bp 69.84 48.19 98.26
cn_combo_scaffold_5460 XAN48_84
Genus: Lysobacter (50%)
12 10882 bp 71.49 48.19 96.49
cn_combo_scaffold_5494 XAN48_85
Genus: Lysobacter (58.33%)
12 10819 bp 69.68 48.05 91.53
cn_combo_scaffold_5730 XAN48_94
Order: Xanthomonadales (66.67%)
12 12899 bp 71.37 50.42 94.64
cn_combo_scaffold_7721 XAN48_150
Genus: Lysobacter (50%)
12 12903 bp 71.21 48.70 94.95
cn_combo_scaffold_8825 XAN48_176
Genus: Lysobacter (58.33%)
12 9116 bp 70.15 52.05 96.19
cn_combo_scaffold_9234 XAN48_188
Order: Xanthomonadales (66.67%)
12 8959 bp 70.80 51.56 90.24
Displaying items 51-100 of 344 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.