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CN-SCN_Xanthomonadaceae_48x

CN-SCN_Xanthomonadales_69_49
In projects: CN-SCN

Consensus taxonomy: Xanthomonadales  →  Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 49.15 Longest contig: 56.08 Kbp Bin length: 3.65 Mbp GC content: 68.82 %
Contigs count: 344 Features count: 3771 rRNAs count: 0 tRNAs count: 44

Genome completeness

partial RP 7 / 55 MC: 5 BSCG 10 / 51 MC: 6 ASCG 6 / 38 MC: 3

Description

Partial double 6 and 6

Displaying items 1-50 of 344 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_10395 XAN48_225
Species: Stenotrophomonas maltophilia (50%)
4 6089 bp 59.85 7.42 95.83
cn_combo_scaffold_10303 XAN48_220
Order: Xanthomonadales (66.67%)
6 6152 bp 61.67 7.95 84.75
cn_combo_scaffold_13899 XAN48_316
Domain: Bacteria (60%)
5 5274 bp 60.56 8.13 89.48
cn_combo_scaffold_10293 XAN48_221
Order: Xanthomonadales (80%)
5 6608 bp 60.74 8.55 94.75
cn_combo_scaffold_8673 XAN48_172
Order: Xanthomonadales (55.56%)
9 7232 bp 63.41 9.31 92.09
cn_combo_scaffold_6267 XAN48_109
Order: Xanthomonadales (60%)
10 9614 bp 60.93 9.88 96.83
cn_combo_scaffold_11997 XAN48_283
Order: Xanthomonadales (66.67%)
6 5313 bp 61.32 10.20 90.18
cn_combo_scaffold_11654 XAN48_265
Species: Xanthomonas euvesicatoria (50%)
6 5463 bp 63.57 10.76 77.65
cn_combo_scaffold_6365 XAN48_113
Species: Xanthomonas euvesicatoria (64.71%)
17 14406 bp 61.27 10.80 94.00
cn_combo_scaffold_9648 XAN48_204
Species: Xanthomonas euvesicatoria (50%)
4 6526 bp 64.19 10.86 99.52
cn_combo_scaffold_7112 XAN48_128
Species: Xanthomonas euvesicatoria (66.67%)
15 12605 bp 63.59 10.94 94.89
cn_combo_scaffold_10565 XAN48_232
Species: Xanthomonas campestris (80%)
5 5996 bp 62.69 11.14 100.02
cn_combo_scaffold_12789 XAN48_307
Genus: Lysobacter (66.67%)
6 5021 bp 65.01 11.89 95.36
cn_combo_scaffold_8624 XAN48_170
Genus: Xanthomonas (66.67%)
9 7266 bp 63.39 11.95 91.58
cn_combo_scaffold_10325 XAN48_222
Order: Xanthomonadales (50%)
6 6135 bp 55.03 14.59 85.57
cn_combo_scaffold_11056 XAN48_246
Order: Xanthomonadales (50%)
6 5746 bp 61.12 21.72 81.50
cn_combo_scaffold_4175 XAN48_48
Order: Xanthomonadales (52.38%)
21 24214 bp 65.13 22.60 87.89
cn_combo_scaffold_11800 XAN48_271
Species: Xanthomonas vesicatoria (50%)
6 5401 bp 63.77 23.59 82.26
cn_combo_scaffold_5171 XAN48_78
Species: Xanthomonas vesicatoria (54.55%)
11 11405 bp 61.32 24.14 94.88
cn_combo_scaffold_7262 XAN48_134
Genus: Xanthomonas (57.14%)
7 8434 bp 61.74 25.21 98.07
cn_combo_scaffold_11496 XAN48_261
Species: Xanthomonas vesicatoria (60%)
5 5533 bp 65.79 29.66 81.66
cn_combo_scaffold_5176 XAN48_79
Species: Xanthomonas vesicatoria (50%)
12 11385 bp 63.08 31.08 95.15
cn_combo_scaffold_9363 XAN48_192
Class: Betaproteobacteria (60%)
5 6705 bp 61.42 31.08 100.90
cn_combo_scaffold_12674 XAN48_302
Order: Xanthomonadales (83.33%)
6 5650 bp 65.91 32.73 87.24
cn_combo_scaffold_4891 XAN48_64
Class: Gammaproteobacteria (50%)
24 19081 bp 63.96 32.81 90.07
cn_combo_scaffold_6366 XAN48_114
Species: Xanthomonas vesicatoria (55.56%)
9 10291 bp 63.87 33.37 97.69
cn_combo_scaffold_2635 XAN48_13
Phylum: Proteobacteria (62.5%)
24 21221 bp 67.75 33.87 95.20
cn_combo_scaffold_15771 XAN48_326
Order: Xanthomonadales (71.43%)
7 5311 bp 64.09 36.11 77.39
cn_combo_scaffold_6175 XAN48_107
Species: Pseudoxanthomonas suwonensis (55.56%)
9 10401 bp 60.34 40.55 94.64
cn_combo_scaffold_5085 XAN48_74
Order: Xanthomonadales (53.85%)
13 11585 bp 57.10 42.70 90.92
cn_combo_scaffold_3164 XAN48_28
Order: Xanthomonadales (63.16%)
19 18029 bp 62.75 44.02 93.70
cn_combo_scaffold_10834 XAN48_239
Order: Xanthomonadales (85.71%)
7 5852 bp 71.99 44.24 93.87
cn_combo_scaffold_11335 XAN48_250
Order: Xanthomonadales (85.71%)
7 5609 bp 68.05 44.41 92.10
cn_combo_scaffold_12099 XAN48_285
Order: Xanthomonadales (60%)
5 5272 bp 71.05 44.67 96.05
cn_combo_scaffold_10520 XAN48_229
Order: Xanthomonadales (85.71%)
7 6023 bp 69.07 44.84 88.96
cn_combo_scaffold_12107 XAN48_286
Genus: Lysobacter (60%)
5 5269 bp 71.19 44.92 95.71
cn_combo_scaffold_8838 XAN48_177
Genus: Lysobacter (66.67%)
9 7120 bp 69.30 44.93 94.76
cn_combo_scaffold_10461 XAN48_227
Order: Xanthomonadales (66.67%)
6 6054 bp 65.33 45.03 90.40
cn_combo_scaffold_12771 XAN48_306
Order: Xanthomonadales (62.5%)
8 5625 bp 69.96 45.05 94.79
cn_combo_scaffold_3846 XAN48_37
Order: Xanthomonadales (85.71%)
14 15100 bp 64.97 45.09 92.28
cn_combo_scaffold_7533 XAN48_142
Genus: Lysobacter (62.5%)
8 8177 bp 70.88 45.20 95.17
cn_combo_scaffold_11058 XAN48_247
Order: Xanthomonadales (55.56%)
9 5745 bp 67.75 45.48 89.71
cn_combo_scaffold_5004 XAN48_67
Order: Xanthomonadales (90.91%)
11 11745 bp 67.99 45.66 92.67
cn_combo_scaffold_9490 XAN48_197
Genus: Lysobacter (66.67%)
6 6631 bp 65.63 45.72 90.26
cn_combo_scaffold_10372 XAN48_224
Species: Pseudoxanthomonas suwonensis (50%)
6 6103 bp 69.92 45.81 96.94
cn_combo_scaffold_11758 XAN48_269
Genus: Lysobacter (57.14%)
7 5417 bp 67.84 45.82 93.10
cn_combo_scaffold_4577 XAN48_58
Order: Xanthomonadales (80%)
15 12849 bp 69.14 45.91 95.35
cn_combo_scaffold_6068 XAN48_105
Genus: Lysobacter (53.85%)
13 9907 bp 67.79 45.96 91.48
cn_combo_scaffold_14233 XAN48_320
Order: Xanthomonadales (85.71%)
7 6173 bp 69.46 46.02 90.98
cn_combo_scaffold_7313 XAN48_135
Order: Xanthomonadales (75%)
8 8385 bp 69.53 46.07 90.20
Displaying items 1-50 of 344 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.