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CN-SCN_Xanthomonadaceae_48x

CN-SCN_Xanthomonadales_69_49
In projects: CN-SCN

Consensus taxonomy: Xanthomonadales  →  Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 49.15 Longest contig: 56.08 Kbp Bin length: 3.65 Mbp GC content: 68.82 %
Contigs count: 344 Features count: 3771 rRNAs count: 0 tRNAs count: 44

Genome completeness

partial RP 7 / 55 MC: 5 BSCG 10 / 51 MC: 6 ASCG 6 / 38 MC: 3

Description

Partial double 6 and 6

Displaying items 1-50 of 344 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_3820 XAN48_343b
Genus: Lysobacter (54.9%)
51 56078 bp 68.06 82.27 89.07
cn_combo_scaffold_11928 XAN48_280
Species: Lysobacter dokdonensis (66.67%)
3 5343 bp 69.19 67.28 96.74
cn_combo_scaffold_16497 XAN48_331
Class: Gammaproteobacteria (71.43%)
7 7449 bp 61.42 66.73 89.22
cn_combo_scaffold_7888 XAN48_152
Order: Xanthomonadales (72.73%)
11 7852 bp 65.33 65.07 81.95
cn_combo_scaffold_9442 XAN48_194
Genus: Lysobacter (55.56%)
18 13677 bp 70.01 63.19 96.12
cn_combo_scaffold_10893 XAN48_241
Order: Xanthomonadales (61.54%)
13 11020 bp 70.45 62.51 94.82
cn_combo_scaffold_10724 XAN48_234
Order: Xanthomonadales (80%)
5 5912 bp 66.59 62.09 86.06
cn_combo_scaffold_11583 XAN48_341a
Order: Xanthomonadales (55.56%)
9 5496 bp 69.80 59.90 88.10
cn_combo_scaffold_4882 XAN48_63
Genus: Lysobacter (50%)
18 14253 bp 70.85 59.83 86.40
cn_combo_scaffold_7489 XAN48_140
Order: Xanthomonadales (87.5%)
8 8896 bp 71.67 59.44 98.61
cn_combo_scaffold_4176 XAN48_49
Order: Xanthomonadales (81.25%)
16 16244 bp 67.85 59.28 94.72
cn_combo_scaffold_11797 XAN48_272
Genus: Lysobacter (50%)
6 5403 bp 69.89 58.65 92.45
cn_combo_scaffold_3327 XAN48_34
Order: Xanthomonadales (60%)
15 17247 bp 68.44 57.31 93.59
cn_combo_scaffold_3241 XAN48_31
Order: Xanthomonadales (58.82%)
17 17635 bp 70.93 57.23 92.12
cn_combo_scaffold_11883 XAN48_277
Genus: Lysobacter (66.67%)
6 5364 bp 69.48 57.01 91.50
cn_combo_scaffold_16247 XAN48_328
Genus: Lysobacter (50%)
6 6068 bp 70.29 56.84 93.59
cn_combo_scaffold_5034 XAN48_70
Order: Xanthomonadales (87.5%)
8 11684 bp 66.39 56.74 93.13
cn_combo_scaffold_4436 XAN48_56
Genus: Arenimonas (60.87%)
23 25303 bp 67.83 56.62 94.14
cn_combo_scaffold_12246 XAN48_295
Order: Xanthomonadales (85.71%)
7 6580 bp 64.71 56.41 82.71
cn_combo_scaffold_5676 XAN48_91
Genus: Lysobacter (50%)
10 10996 bp 69.76 56.37 94.02
cn_combo_scaffold_6677 XAN48_122
Order: Xanthomonadales (90%)
10 9114 bp 68.44 56.37 90.45
cn_combo_scaffold_8846 XAN48_179
Order: Xanthomonadales (71.43%)
7 7108 bp 69.63 56.26 92.68
cn_combo_scaffold_11862 XAN48_276
Genus: Lysobacter (61.11%)
18 12979 bp 69.86 56.04 86.86
cn_combo_scaffold_10000 XAN48_214
Order: Xanthomonadales (55.56%)
9 6512 bp 68.69 56.02 92.05
cn_combo_scaffold_18683 XAN48_334
Genus: Lysobacter (55.56%)
9 5739 bp 71.37 55.88 92.68
cn_combo_scaffold_2704 XAN48_16
Species: Pseudoxanthomonas suwonensis (50%)
30 26347 bp 66.39 55.78 87.96
cn_combo_scaffold_7712 XAN48_148
Order: Xanthomonadales (100%)
8 8006 bp 69.99 55.75 93.04
cn_combo_scaffold_18960 XAN48_335
Order: Xanthomonadales (80%)
5 6276 bp 70.25 55.70 95.89
cn_combo_scaffold_2082 XAN48_8
Order: Xanthomonadales (70.59%)
17 26316 bp 68.25 55.60 90.94
cn_combo_scaffold_20770 XAN48_339
Genus: Lysobacter (50%)
8 8204 bp 69.59 55.47 91.97
cn_combo_scaffold_10066 XAN48_218
Genus: Lysobacter (69.23%)
13 12425 bp 68.85 55.46 86.80
cn_combo_scaffold_4063 XAN48_44
Order: Xanthomonadales (88.89%)
9 14390 bp 71.12 55.35 94.09
cn_combo_scaffold_12416 XAN48_298
Class: Gammaproteobacteria (80%)
5 5157 bp 68.31 55.32 92.50
cn_combo_scaffold_5011 XAN48_68
Genus: Lysobacter (54.55%)
11 11740 bp 71.53 55.31 94.32
cn_combo_scaffold_5920 XAN48_99
Genus: Lysobacter (61.54%)
13 10122 bp 69.32 55.08 94.44
cn_combo_scaffold_7628 XAN48_145
Genus: Lysobacter (62.5%)
8 8090 bp 71.40 55.06 94.49
cn_combo_scaffold_7591 XAN48_143
Genus: Lysobacter (50%)
6 8125 bp 71.75 55.05 98.92
cn_combo_scaffold_14664 XAN48_324
Genus: Lysobacter (55.56%)
9 8595 bp 69.20 54.92 96.27
cn_combo_scaffold_6003 XAN48_102
Species: Lysobacter dokdonensis (50%)
10 9986 bp 71.43 54.92 97.07
cn_combo_scaffold_11623 XAN48_264
Genus: Lysobacter (66.67%)
6 5478 bp 68.67 54.78 91.35
cn_combo_scaffold_21459 XAN48_341b
Species: Lysobacter dokdonensis (60%)
5 5546 bp 68.99 54.76 89.09
cn_combo_scaffold_5504 XAN48_86
Class: Gammaproteobacteria (54.55%)
11 10806 bp 67.67 54.72 91.64
cn_combo_scaffold_10024 XAN48_215
Genus: Lysobacter (50%)
8 6302 bp 70.18 54.65 89.40
cn_combo_scaffold_9809 XAN48_206
Order: Xanthomonadales (57.14%)
7 6435 bp 68.47 54.64 82.87
cn_combo_scaffold_4508 XAN48_57
Order: Xanthomonadales (62.5%)
16 13023 bp 67.72 54.48 90.72
cn_combo_scaffold_7494 XAN48_141
Order: Xanthomonadales (64.29%)
14 17439 bp 70.74 54.43 90.25
cn_combo_scaffold_4435 XAN48_55
Genus: Lysobacter (62.5%)
24 21269 bp 70.13 54.24 93.05
cn_combo_scaffold_4697 XAN48_60
Order: Xanthomonadales (73.33%)
15 12521 bp 71.36 54.18 95.50
cn_combo_scaffold_4430 XAN48_54
Class: Gammaproteobacteria (73.33%)
15 13221 bp 69.56 53.90 93.49
cn_combo_scaffold_10739 XAN48_235
Genus: Lysobacter (50%)
10 11454 bp 67.46 53.88 91.07
Displaying items 1-50 of 344 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.