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CN-SCN_Xanthomonadaceae_48x

CN-SCN_Xanthomonadales_69_49
In projects: CN-SCN

Consensus taxonomy: Xanthomonadales  →  Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 49.15 Longest contig: 56.08 Kbp Bin length: 3.65 Mbp GC content: 68.82 %
Contigs count: 344 Features count: 3771 rRNAs count: 0 tRNAs count: 44

Genome completeness

partial RP 7 / 55 MC: 5 BSCG 10 / 51 MC: 6 ASCG 6 / 38 MC: 3

Description

Partial double 6 and 6

Displaying items 1-50 of 344 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_8918 XAN48_180
Order: Xanthomonadales (50%)
10 7051 bp 67.64 47.53 72.39
cn_combo_scaffold_16130 XAN48_327
Order: Xanthomonadales (80%)
5 7360 bp 63.23 52.30 74.76
cn_combo_scaffold_15771 XAN48_326
Order: Xanthomonadales (71.43%)
7 5311 bp 64.09 36.11 77.39
cn_combo_scaffold_11654 XAN48_265
Species: Xanthomonas euvesicatoria (50%)
6 5463 bp 63.57 10.76 77.65
cn_combo_scaffold_5417 XAN48_83
Genus: Lysobacter (50%)
22 15297 bp 69.05 50.26 80.84
cn_combo_scaffold_14372 XAN48_322
Class: Gammaproteobacteria (85.71%)
7 6526 bp 68.07 51.07 81.00
cn_combo_scaffold_10337 XAN48_223
Order: Xanthomonadales (75%)
8 8976 bp 72.27 51.57 81.22
cn_combo_scaffold_8485 XAN48_166
Order: Xanthomonadales (77.78%)
9 7881 bp 69.20 52.13 81.42
cn_combo_scaffold_11056 XAN48_246
Order: Xanthomonadales (50%)
6 5746 bp 61.12 21.72 81.50
cn_combo_scaffold_11496 XAN48_261
Species: Xanthomonas vesicatoria (60%)
5 5533 bp 65.79 29.66 81.66
cn_combo_scaffold_7888 XAN48_152
Order: Xanthomonadales (72.73%)
11 7852 bp 65.33 65.07 81.95
cn_combo_scaffold_9349 XAN48_191
Order: Xanthomonadales (57.14%)
7 7541 bp 68.31 50.34 82.07
cn_combo_scaffold_11800 XAN48_271
Species: Xanthomonas vesicatoria (50%)
6 5401 bp 63.77 23.59 82.26
cn_combo_scaffold_13722 XAN48_315
Order: Xanthomonadales (57.14%)
7 5428 bp 69.73 53.39 82.41
cn_combo_scaffold_12246 XAN48_295
Order: Xanthomonadales (85.71%)
7 6580 bp 64.71 56.41 82.71
cn_combo_scaffold_9809 XAN48_206
Order: Xanthomonadales (57.14%)
7 6435 bp 68.47 54.64 82.87
cn_combo_scaffold_3320 XAN48_33
Order: Xanthomonadales (52.63%)
19 17928 bp 62.73 49.41 83.15
cn_combo_scaffold_8751 XAN48_175
Order: Xanthomonadales (62.5%)
8 7178 bp 68.38 51.13 83.20
cn_combo_scaffold_12194 XAN48_292
Order: Xanthomonadales (80%)
5 5236 bp 68.85 53.71 83.54
cn_combo_scaffold_5056 XAN48_73
Order: Xanthomonadales (58.33%)
12 11656 bp 69.89 51.71 83.67
cn_combo_scaffold_3478 XAN48_340a
Order: Xanthomonadales (55.17%)
29 22937 bp 69.14 47.63 83.90
cn_combo_scaffold_11459 XAN48_260
Order: Xanthomonadales (71.43%)
7 5556 bp 69.01 50.67 84.56
cn_combo_scaffold_7222 XAN48_132
Order: Xanthomonadales (66.67%)
9 9302 bp 67.28 48.40 84.69
cn_combo_scaffold_10303 XAN48_220
Order: Xanthomonadales (66.67%)
6 6152 bp 61.67 7.95 84.75
cn_combo_scaffold_9879 XAN48_209
Genus: Pseudoxanthomonas (50%)
8 9540 bp 70.44 50.20 84.97
cn_combo_scaffold_11216 XAN48_248
Genus: Lysobacter (60%)
5 5667 bp 68.29 49.37 85.12
cn_combo_scaffold_7693 XAN48_147
Order: Xanthomonadales (75%)
8 8017 bp 71.19 49.07 85.17
cn_combo_scaffold_9878 XAN48_210
Order: Xanthomonadales (88.89%)
9 7697 bp 71.96 49.07 85.20
cn_combo_scaffold_10325 XAN48_222
Order: Xanthomonadales (50%)
6 6135 bp 55.03 14.59 85.57
cn_combo_scaffold_8006 XAN48_155
Class: Gammaproteobacteria (70%)
10 7761 bp 67.50 47.11 85.62
cn_combo_scaffold_3032 XAN48_22
Order: Xanthomonadales (60%)
30 28891 bp 70.90 49.85 85.84
cn_combo_scaffold_10724 XAN48_234
Order: Xanthomonadales (80%)
5 5912 bp 66.59 62.09 86.06
cn_combo_scaffold_7411 XAN48_138
Genus: Lysobacter (50%)
10 8298 bp 69.05 49.45 86.12
cn_combo_scaffold_10656 XAN48_233
Order: Xanthomonadales (77.78%)
9 7673 bp 71.59 51.66 86.13
cn_combo_scaffold_5177 XAN48_80
Order: Xanthomonadales (73.91%)
23 20856 bp 72.28 49.81 86.36
cn_combo_scaffold_4882 XAN48_63
Genus: Lysobacter (50%)
18 14253 bp 70.85 59.83 86.40
cn_combo_scaffold_10926 XAN48_242
Order: Xanthomonadales (71.43%)
7 5802 bp 68.84 52.91 86.45
cn_combo_scaffold_10066 XAN48_218
Genus: Lysobacter (69.23%)
13 12425 bp 68.85 55.46 86.80
cn_combo_scaffold_11862 XAN48_276
Genus: Lysobacter (61.11%)
18 12979 bp 69.86 56.04 86.86
cn_combo_scaffold_7938 XAN48_153
Genus: Lysobacter (50%)
10 7808 bp 68.42 49.82 87.06
cn_combo_scaffold_7241 XAN48_133
Order: Xanthomonadales (70%)
10 8457 bp 69.63 53.66 87.12
cn_combo_scaffold_11786 XAN48_344
Order: Xanthomonadales (50%)
6 7150 bp 67.09 52.56 87.19
cn_combo_scaffold_8098 XAN48_157
Order: Xanthomonadales (66.67%)
9 7680 bp 70.51 48.59 87.23
cn_combo_scaffold_12674 XAN48_302
Order: Xanthomonadales (83.33%)
6 5650 bp 65.91 32.73 87.24
cn_combo_scaffold_5606 XAN48_89
Order: Xanthomonadales (61.54%)
13 10634 bp 70.27 48.28 87.31
cn_combo_scaffold_20825 XAN48_340b
Species: Lysobacter daejeonensis (50%)
6 5551 bp 70.69 50.10 87.44
cn_combo_scaffold_7356 XAN48_137
Genus: Lysobacter (57.14%)
7 8669 bp 68.96 48.45 87.83
cn_combo_scaffold_11012 XAN48_244
Order: Xanthomonadales (55.56%)
9 10176 bp 71.60 51.06 87.85
cn_combo_scaffold_5230 XAN48_342a
Order: Xanthomonadales (53.33%)
15 11272 bp 69.42 53.42 87.85
cn_combo_scaffold_4175 XAN48_48
Order: Xanthomonadales (52.38%)
21 24214 bp 65.13 22.60 87.89
Displaying items 1-50 of 344 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.