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CN-SCN_Xanthomonadaceae_48x

CN-SCN_Xanthomonadales_69_49
In projects: CN-SCN

Consensus taxonomy: Xanthomonadales  →  Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 49.15 Longest contig: 56.08 Kbp Bin length: 3.65 Mbp GC content: 68.82 %
Contigs count: 344 Features count: 3771 rRNAs count: 0 tRNAs count: 44

Genome completeness

partial RP 7 / 55 MC: 5 BSCG 10 / 51 MC: 6 ASCG 6 / 38 MC: 3

Description

Partial double 6 and 6

Displaying items 1-50 of 344 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_9363 XAN48_192
Class: Betaproteobacteria (60%)
5 6705 bp 61.42 31.08 100.90
cn_combo_scaffold_10565 XAN48_232
Species: Xanthomonas campestris (80%)
5 5996 bp 62.69 11.14 100.02
cn_combo_scaffold_13621 XAN48_312
Genus: Lysobacter (63.64%)
11 9489 bp 72.71 51.91 99.94
cn_combo_scaffold_9648 XAN48_204
Species: Xanthomonas euvesicatoria (50%)
4 6526 bp 64.19 10.86 99.52
cn_combo_scaffold_7591 XAN48_143
Genus: Lysobacter (50%)
6 8125 bp 71.75 55.05 98.92
cn_combo_scaffold_4927 XAN48_65
Order: Xanthomonadales (76.92%)
13 11924 bp 71.69 52.76 98.80
cn_combo_scaffold_8307 XAN48_165
Genus: Lysobacter (53.85%)
13 10570 bp 72.41 48.61 98.71
cn_combo_scaffold_6546 XAN48_119
Genus: Lysobacter (50%)
6 9252 bp 70.95 49.47 98.64
cn_combo_scaffold_12757 XAN48_305
Species: Lysobacter arseniciresistens (75%)
8 6941 bp 70.47 51.84 98.63
cn_combo_scaffold_7489 XAN48_140
Order: Xanthomonadales (87.5%)
8 8896 bp 71.67 59.44 98.61
cn_combo_scaffold_10862 XAN48_240
Order: Xanthomonadales (100%)
5 5834 bp 68.03 49.18 98.58
cn_combo_scaffold_12741 XAN48_304
Species: Lysobacter arseniciresistens (85.71%)
7 6964 bp 69.43 46.78 98.56
cn_combo_scaffold_5918 XAN48_98
Order: Xanthomonadales (90%)
10 10779 bp 71.03 49.57 98.41
cn_combo_scaffold_5362 XAN48_82
Order: Xanthomonadales (58.33%)
12 11040 bp 69.84 48.19 98.26
cn_combo_scaffold_2712 XAN48_18
Order: Xanthomonadales (71.43%)
14 20685 bp 70.18 47.80 98.14
cn_combo_scaffold_7262 XAN48_134
Genus: Xanthomonas (57.14%)
7 8434 bp 61.74 25.21 98.07
cn_combo_scaffold_6366 XAN48_114
Species: Xanthomonas vesicatoria (55.56%)
9 10291 bp 63.87 33.37 97.69
cn_combo_scaffold_7878 XAN48_151
Genus: Lysobacter (87.5%)
8 7858 bp 71.01 47.98 97.66
cn_combo_scaffold_6664 XAN48_121
Genus: Lysobacter (62.5%)
8 9123 bp 70.79 47.39 97.60
cn_combo_scaffold_10944 XAN48_243
Genus: Lysobacter (57.14%)
7 5796 bp 70.69 46.67 97.46
cn_combo_scaffold_5885 XAN48_97
Genus: Lysobacter (50%)
6 10172 bp 72.29 52.10 97.36
cn_combo_scaffold_5882 XAN48_96
Genus: Lysobacter (66.67%)
6 10177 bp 71.16 48.17 97.34
cn_combo_scaffold_6021 XAN48_103
Species: Lysobacter dokdonensis (50%)
10 9964 bp 70.05 50.12 97.28
cn_combo_scaffold_6752 XAN48_125
Order: Xanthomonadales (66.67%)
9 9020 bp 70.01 46.85 97.25
cn_combo_scaffold_6713 XAN48_124
Order: Xanthomonadales (66.67%)
9 9067 bp 71.45 49.60 97.21
cn_combo_scaffold_19742 XAN48_336
Genus: Lysobacter (71.43%)
7 6265 bp 68.95 49.21 97.21
cn_combo_scaffold_12885 XAN48_309
Genus: Lysobacter (83.33%)
6 5155 bp 71.68 49.37 97.13
cn_combo_scaffold_9570 XAN48_201
Genus: Lysobacter (57.14%)
7 6576 bp 70.26 53.50 97.13
cn_combo_scaffold_6003 XAN48_102
Species: Lysobacter dokdonensis (50%)
10 9986 bp 71.43 54.92 97.07
cn_combo_scaffold_2844 XAN48_19
Genus: Lysobacter (58.33%)
12 19809 bp 72.24 52.63 97.03
cn_combo_scaffold_5849 XAN48_95
Genus: Lysobacter (60%)
10 10836 bp 71.97 51.52 96.98
cn_combo_scaffold_10372 XAN48_224
Species: Pseudoxanthomonas suwonensis (50%)
6 6103 bp 69.92 45.81 96.94
cn_combo_scaffold_952 XAN48_2
Order: Xanthomonadales (57.35%)
68 50883 bp 69.05 46.25 96.86
cn_combo_scaffold_8836 XAN48_178
Order: Xanthomonadales (81.82%)
11 15144 bp 71.33 48.49 96.85
cn_combo_scaffold_6868 XAN48_126
Genus: Lysobacter (63.64%)
11 12574 bp 69.44 52.90 96.84
cn_combo_scaffold_2714 XAN48_17
Order: Xanthomonadales (75%)
16 20673 bp 69.31 47.60 96.84
cn_combo_scaffold_14124 XAN48_319
Order: Xanthomonadales (57.14%)
7 6277 bp 69.49 50.12 96.83
cn_combo_scaffold_6267 XAN48_109
Order: Xanthomonadales (60%)
10 9614 bp 60.93 9.88 96.83
cn_combo_scaffold_9559 XAN48_200
Genus: Lysobacter (62.5%)
8 7569 bp 70.80 52.05 96.79
cn_combo_scaffold_11928 XAN48_280
Species: Lysobacter dokdonensis (66.67%)
3 5343 bp 69.19 67.28 96.74
cn_combo_scaffold_10244 XAN48_219
Order: Xanthomonadales (71.43%)
7 6185 bp 72.22 50.28 96.72
cn_combo_scaffold_8101 XAN48_159
Order: Xanthomonadales (62.5%)
8 7675 bp 71.01 48.27 96.66
cn_combo_scaffold_10529 XAN48_230
Genus: Lysobacter (71.43%)
7 6019 bp 71.29 50.96 96.59
cn_combo_scaffold_7323 XAN48_136
Genus: Lysobacter (54.55%)
11 9066 bp 70.64 50.03 96.59
cn_combo_scaffold_11460 XAN48_259
Genus: Xanthomonas (50%)
6 5556 bp 68.05 50.61 96.54
cn_combo_scaffold_11455 XAN48_258
Genus: Xanthomonas (50%)
6 5558 bp 69.59 53.36 96.51
cn_combo_scaffold_5460 XAN48_84
Genus: Lysobacter (50%)
12 10882 bp 71.49 48.19 96.49
cn_combo_scaffold_3773 XAN48_36
Genus: Lysobacter (55.56%)
9 15323 bp 71.28 51.11 96.42
cn_combo_scaffold_11782 XAN48_270
Order: Xanthomonadales (83.33%)
6 7421 bp 69.01 50.61 96.42
cn_combo_scaffold_9838 XAN48_207
Genus: Lysobacter (87.5%)
8 9094 bp 71.33 51.28 96.36
Displaying items 1-50 of 344 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.