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cn_combo_scaffold_3820

Alias: XAN48_343b

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_3820_1
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..574
DNA (573bp) protein (191aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=314722 species="Bacteria; Proteobacter
riboflavin kinase n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI000370A57B
riboflavin kinase
cn_combo_scaffold_3820_2
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

608..3391
DNA (2784bp) protein (928aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02002, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0
Isoleucine--tRNA ligase n=1 Tax=Xanthomonas translucens pv. graminis ART-Xtg29 RepID=K8Z597_XANCT
isoleucine--tRNA ligase
cn_combo_scaffold_3820_3
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3391..3888
DNA (498bp) protein (166aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal pep
lipoprotein signal peptidase (EC:3.4.23.36)
Lipoprotein signal peptidase n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WR83_PSEUU
cn_combo_scaffold_3820_4
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

3898..4848
DNA (951bp) protein (317aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxI
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UPJ8_PSEUP
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
cn_combo_scaffold_3820_5
Xanthomonas vesicatoria, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5053..6258
DNA (1206bp) protein (402aa)
Phage-related integrase n=1 Tax=Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535 RepID=D4T149_9XANT
Integrase {ECO:0000313|EMBL:KHM93188.1}; TaxID=56460 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas vesicatoria.;"
intA; putative phage-related integrase protein
cn_combo_scaffold_3820_6
unknown

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6373..6669
DNA (297bp) protein (99aa)

This feature has no annotations

cn_combo_scaffold_3820_7
unknown

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6666..7088
DNA (423bp) protein (141aa)

This feature has no annotations

cn_combo_scaffold_3820_8
unknown

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7242..8915
DNA (1674bp) protein (558aa)

This feature has no annotations

cn_combo_scaffold_3820_9
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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9143..9394
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2UDZ3_XANAP
Uncharacterized protein {ECO:0000313|EMBL:CEM58187.1}; TaxID=340 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestri
hypothetical protein
cn_combo_scaffold_3820_10
unknown

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9391..9681
DNA (291bp) protein (97aa)

This feature has no annotations

cn_combo_scaffold_3820_11
Ectothiorhodospira sp. PHS-1, Ectothiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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9908..10609
DNA (702bp) protein (234aa)
Putative uncharacterized protein n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G520_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EHQ52907.1}; TaxID=519989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Ectothiorhodospira.;" source="Ectothio
cn_combo_scaffold_3820_12
unknown

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10842..11507
DNA (666bp) protein (222aa)

This feature has no annotations

cn_combo_scaffold_3820_13

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11504..17239
DNA (5736bp) protein (1912aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN30738.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
cn_combo_scaffold_3820_14
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17689..18819)
DNA (1131bp) protein (377aa)
Putative uncharacterized protein n=1 Tax=Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) RepID=E8RIW1_DESPD
hypothetical protein
Tax=BJP_IG2102_Gammaproteobacteria_62_140
cn_combo_scaffold_3820_15
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18950..19972
DNA (1023bp) protein (341aa)
DNA repair protein radA n=2 Tax=Xanthomonas campestris pv. translucens RepID=L0T238_XANCT
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=1261556 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas tra
DNA repair protein RadA
cn_combo_scaffold_3820_16
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19972..20295
DNA (324bp) protein (108aa)
DNA repair protein radA n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UPZ6_PSEUP
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdo
DNA repair protein RadA
cn_combo_scaffold_3820_17
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20396..21784
DNA (1389bp) protein (463aa)
UPI0003D06149 related cluster n=1 Tax=unknown RepID=UPI0003D06149
Uncharacterized protein {ECO:0000313|EMBL:KGM55787.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeon
hypothetical protein
cn_combo_scaffold_3820_18
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21798..22127)
DNA (330bp) protein (110aa)
Multidrug resistance membrane translocase n=2 Tax=Xanthomonas campestris pv. campestris RepID=Q4UST7_XANC8
Inner membrane component of tripartite multidrug resistance system {ECO:0000313|EMBL:KGQ19843.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadacea
Major facilitator superfamily protein
cn_combo_scaffold_3820_19
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22091..23359)
DNA (1269bp) protein (423aa)
EmrB/QacA subfamily drug resistance transporter n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7URT5_PSEUP
Inner membrane component of tripartite multidrug resistance system {ECO:0000313|EMBL:KGQ19843.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadacea
EmrB/QacA subfamily drug resistance transporter
cn_combo_scaffold_3820_20
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23518..24738)
DNA (1221bp) protein (407aa)
multidrug transporter n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002E2CED6
Multidrug transporter {ECO:0000313|EMBL:EYR66778.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici A
hemolysin D rbh
cn_combo_scaffold_3820_21
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24748..25656)
DNA (909bp) protein (303aa)
multidrug RND transporter n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI00030C0F1A
NodT family RND efflux system outer membrane lipoprotein
RND efflux system, outer membrane lipoprotein, NodT family {ECO:0000313|EMBL:ADV26840.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudo
cn_combo_scaffold_3820_22
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26116..26574)
DNA (459bp) protein (153aa)
MarR family transcriptional regulator n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7URT8_PSEUP
MarR family transcriptional regulator {ECO:0000313|EMBL:EYR66776.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lyso
MarR family transcriptional regulator
cn_combo_scaffold_3820_23
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26762..27511)
DNA (750bp) protein (250aa)
Cytochrome C assembly transmembrane protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7URT9_PSEUP
Membrane protein {ECO:0000313|EMBL:EYR66775.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;
cytochrome C assembly transmembrane protein
cn_combo_scaffold_3820_24
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27572..27904
DNA (333bp) protein (111aa)
Putative uncharacterized protein n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L5Q1_9GAMM
Membrane protein {ECO:0000313|EMBL:KGM53771.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis G
hypothetical protein
cn_combo_scaffold_3820_25
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27911..28315)
DNA (405bp) protein (135aa)
Ribonucleotide reductase subunit alpha n=1 Tax=Rhodanobacter denitrificans RepID=I4WYJ6_9GAMM
Ribonucleotide reductase subunit alpha {ECO:0000313|EMBL:KGM53772.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lys
hypothetical protein
cn_combo_scaffold_3820_26
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28577..29557
DNA (981bp) protein (327aa)
Cyclic pyranopterin monophosphate synthase {ECO:0000256|HAMAP-Rule:MF_01225}; EC=4.1.99.18 {ECO:0000256|HAMAP-Rule:MF_01225};; Molybdenum cofactor biosynthesis protein A {ECO:0000256|HAMAP-Rule:MF_012
Cyclic pyranopterin monophosphate synthase n=1 Tax=Rhodanobacter denitrificans RepID=M4NQY6_9GAMM
molybdenum cofactor biosynthesis protein A
cn_combo_scaffold_3820_27
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29567..30541
DNA (975bp) protein (325aa)
Bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WTW5_9GAMM
Molybdopterin-guanine dinucleotide biosynthesis protein MoaC {ECO:0000313|EMBL:KGM53774.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lys
GTP cyclohydrolase subunit MoaC
cn_combo_scaffold_3820_28
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30538..31785
DNA (1248bp) protein (416aa)
Molybdopterin biosynthesis n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WTW6_9GAMM
Molybdopterin biosynthesis protein {ECO:0000313|EMBL:KGM53775.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobac
molybdenum cofactor synthesis domain protein
cn_combo_scaffold_3820_29
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32489..32842
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia SKK35 RepID=M5CMQ2_STEMA
Uncharacterized protein {ECO:0000313|EMBL:CCP11974.1}; TaxID=1118156 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas malto
hypothetical protein
cn_combo_scaffold_3820_30
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33036..34445
DNA (1410bp) protein (470aa)
Nitrite extrusion protein 2 n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L5R0_9GAMM
Nitrate/nitrite transporter NarK {ECO:0000313|EMBL:KGM53778.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacte
narK; major facilitator superfamily transmembrane nitrite extrusion protein
Displaying items 1-30 of 51 in total

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