ggKbase home page

cn_combo_scaffold_3320_19

Organism: CN-SCN_Xanthomonadaceae_48x

partial RP 7 / 55 MC: 5 BSCG 10 / 51 MC: 6 ASCG 6 / 38 MC: 3
Location: comp(17709..17927)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L2A4_FRAAD similarity UNIREF
DB: UNIREF100
  • Identity: 95.8
  • Coverage: 72.0
  • Bit_score: 139
  • Evalue 1.30e-30
sigma-70 family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 95.8
  • Coverage: 72.0
  • Bit_score: 139
  • Evalue 3.60e-31
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xa similarity UNIPROT
DB: UniProtKB
  • Identity: 95.8
  • Coverage: 72.0
  • Bit_score: 139
  • Evalue 1.80e-30

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Frateuria aurantia → Frateuria → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 219
ACCGTGCGCAACGTGCTGGCCGGGCTGACCCCGCGCGAAGCCAAGGTGCTGCGCATGCGCTTCGGCATCGACATGAACACCGACCACACCCTGGAAGAAGTCGGCAAGCAGTTCGACGTGACCCGCGAGCGCATCCGCCAGATCGAAGCCAAGGCGCTGCGCAAGCTGCGCCACCCCAGCCGTTCGGAGACGCTGCGCAGCTTCCTCGACGTGGAGTGA
PROTEIN sequence
Length: 73
TVRNVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSETLRSFLDVE*