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cn_combo_scaffold_4176_15

Organism: CN-SCN_Xanthomonadaceae_48x

partial RP 7 / 55 MC: 5 BSCG 10 / 51 MC: 6 ASCG 6 / 38 MC: 3
Location: comp(14356..14928)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma24 factor {ECO:0000313|EMBL:KGM54679.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter d similarity UNIPROT
DB: UniProtKB
  • Identity: 72.7
  • Coverage: 183.0
  • Bit_score: 262
  • Evalue 4.80e-67
Sigma-70 family RNA polymerase sigma factor id=3013681 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=unknown taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 67.5
  • Coverage: 194.0
  • Bit_score: 243
  • Evalue 1.60e-61
RNA polymerase ECF-type sigma factor similarity KEGG
DB: KEGG
  • Identity: 61.3
  • Coverage: 194.0
  • Bit_score: 210
  • Evalue 5.70e-52

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Taxonomy

Lysobacter daejeonensis → Lysobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 573
ATGCTGATGCAGGCCATGCCGCTACCGCAGCCCGTTGAAACCGACGACGACGCCGGCTTGGCGCGGCGCGCGGCCTGCGCCGACGTATCGGCATTCGAGCAGCTCTACCGCCGCCACCACCGCCGCGTGCACGGGGTGATCGTGCGGCTAGTGGGGCAGGCGGGAGCCCGCGCGGAAGACCTTACCCAGGAGGCGTTCGTGCGCGCTTGGCAGGCGTTGCCGGCGTTCCGGTTCGAGAGCGCGGTGTCGACCTGGCTGCATCGGTTGGCGGTCAATACCGCGCTGATGGAACTGCGCGCGCGCCGCAGCCGGCCGTGGCAGGAAGATGACGAGGATGCCCTCGATGCGGTGTCCGCGCCGGATACCGTCGGCCGCGCCGTGCTTGGGCGCGATCTGGAGCGGGCAGTCGCCAGCCTGCCGCCGCGCGCGCGCGCGGTGCTGGTACTGCACGACGTGGAAGGCTGGAAGCACGAGGAAATCGCCGGCGAGCTGGGCATGGCGGTGGGCAGTTCGAAGGCGCAGCTGCATCGTGCGCGCGGACTGCTGCGCGCACGGATTGGAGGAACGGCATGA
PROTEIN sequence
Length: 191
MLMQAMPLPQPVETDDDAGLARRAACADVSAFEQLYRRHHRRVHGVIVRLVGQAGARAEDLTQEAFVRAWQALPAFRFESAVSTWLHRLAVNTALMELRARRSRPWQEDDEDALDAVSAPDTVGRAVLGRDLERAVASLPPRARAVLVLHDVEGWKHEEIAGELGMAVGSSKAQLHRARGLLRARIGGTA*