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cn_combo_scaffold_4290_9

Organism: CN-SCN_Xanthomonadaceae_48x

partial RP 7 / 55 MC: 5 BSCG 10 / 51 MC: 6 ASCG 6 / 38 MC: 3
Location: 4299..4865

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma-24 subunit n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W218_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 71.1
  • Coverage: 187.0
  • Bit_score: 269
  • Evalue 2.80e-69
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:EYR67644.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter similarity UNIPROT
DB: UniProtKB
  • Identity: 73.4
  • Coverage: 188.0
  • Bit_score: 277
  • Evalue 1.40e-71
RNA polymerase sigma factor, sigma-70 family similarity KEGG
DB: KEGG
  • Identity: 68.6
  • Coverage: 185.0
  • Bit_score: 252
  • Evalue 9.90e-65

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Taxonomy

Lysobacter capsici → Lysobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 567
ATGGATGCCGATCGCGCCCTTGTCGAAGCCGTGCTCGAAAACCGCCCCGGCGCGTTCGAGCAGCTCGTGCGCGACTACCAGGGCCTGTGCTGGCACGTGATCCAGCGCATGGTGCGGCACCCGGAGGACACCCGCGAGCTGTGCCAGGACGCGTTCCTGCGCGTGCACCGCTACCTGCACCAGTACCGTTTCGACAGCCCGCTGAAATCGTGGATCGGGCAGGTGGCCTATTCGGTGGCGAAGCGGCACCTGGAGCGCAAGCGCATCCCGCTGGCGGAGCCGGCGGGCGACGAGGACGGTGTGTCGCTGCTCGACAACGTGGGCGACGGCTTCGACCTCGCCGCCGCGCATGCCGGCGCCGAGGCCGAGCGCGAACTGCACGCCGCCATCGAGCGCCTACCGCCATTGCAGCGCATGATCCTGACCCTGTACCACCTGGAAGAGCTGCCGATCGGCGAGATCGCCGCCATCACCGGCTTGGCCGACGGCACGATCAAGAGCCACCTGTTCCGCAGCCGCAACAGATTGCGCGAGCTGCTTGCCCCGCGCATTGGAGTCGCCGCATGA
PROTEIN sequence
Length: 189
MDADRALVEAVLENRPGAFEQLVRDYQGLCWHVIQRMVRHPEDTRELCQDAFLRVHRYLHQYRFDSPLKSWIGQVAYSVAKRHLERKRIPLAEPAGDEDGVSLLDNVGDGFDLAAAHAGAEAERELHAAIERLPPLQRMILTLYHLEELPIGEIAAITGLADGTIKSHLFRSRNRLRELLAPRIGVAA*