ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

cn_combo_scaffold_9527_12

Organism: CN-SCN_Xanthomonadaceae_48x

partial RP 7 / 55 MC: 5 BSCG 10 / 51 MC: 6 ASCG 6 / 38 MC: 3
Location: 9870..11216

Top 3 Functional Annotations

Value Algorithm Source
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000256|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000256|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_0 similarity UNIPROT
DB: UniProtKB
  • Identity: 73.6
  • Coverage: 443.0
  • Bit_score: 653
  • Evalue 2.30e-184
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7G921_XANCT similarity UNIREF
DB: UNIREF100
  • Identity: 73.6
  • Coverage: 443.0
  • Bit_score: 653
  • Evalue 1.60e-184
TrmA family RNA methyltransferase similarity KEGG
DB: KEGG
  • Identity: 73.1
  • Coverage: 443.0
  • Bit_score: 646
  • Evalue 7.30e-183

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Xanthomonas translucens → Xanthomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1347
GTGGCCCGCCTCGACCAGACCCCCAAGACCCTCGACGTCCTCCATCTCACCCACGATGGGCGTGGCGTCGCCCGCTGGCCGGAGGGCCACTCGCAGGCCGGCAAGGCCGTGTTCGTTGCCGGTGCGCTGCCGGGTGAAACCGTCTCCGTGCAGCAGACCGCGCGCTCCAAGCACTTCGACGAGGCGAAGACGTTGGAAGTGCTCGCCGCATCGCCGGACCGCGTGACGCCGCGCTGCCCGCATTTCGGCGTCTGCGCCGGCTGCGTGCTGCAGCATTTGTCCGAAGACCGGCAGATCGAAGCCAAGCAGCAGGTGCTGCTGGACAACCTGCAGCGCATCGGCCACGTGGCGCCGGCCGCGGTGCTGCCGCCGCTGCGTGGGGAGGCCTGGGGCTATCGGCGCAAGGGCCGCTTGTCGGTGCGGCGGGTGGAAAAGAAGGACAAGACGCTGGTGGGCTTCCGCGAAACCGACCCGCGTTTCGTCGCCGACCTGCGCGAATGCCATACCGTCATTCCGCAGCTGGGCTTCAAGCTGGACGCGCTGGGCGCGCTGGTGGACGGCATGGACGCGCGCCGCGACATCCCGCAGATCGAATTCATCGCCGGCGATGCCGCCATCGCGCTGGTGTTCCGGCACCTGCAGCCGTTGTCCGAGGCGGACCGGGCGAAGCTTGCCGCGTTCGGGCAGGCGCATGGGTTCGCCATCTTCCTGCAGCCAGGCGGCAACGATTCCGTGCATCCGCTCGGCGGCGAGGCGCCGCAGCTGTCGTTCCGGCTGCCGCAGTGGGACGTGGAACTGCTGTTCCGCCCGCTCGATTTCATCCAAGTCAATGCCAAGTTGAACGAGGCGATGATCGCCCGCGCGCTGGACCTGCTGGACGTGCAGCCGGGCGAGCGCGTGCTGGACCTGTTCTGCGGGCTGGGCAACTTCACCCTGCCGCTGGCGCGCGCGTCCGGCGACGGCGCGGTGATCGGGGTGGAGGGGGACGCCGGGCTGGTGGCGCGGGCGCGTTTGAACGCCGAACACAACGGCATGGGCAACGTGCAGTTCTTCGCCGCCGACCTGGCCCAGGACCTGGCCGGACAGCCGTGGCTGAAGCAGGGCTTTGACAAGCTGCTGCTGGACCCGGCCCGCGCCGGTGCGATCGAGGTGCTCAAGCAGCTGCCGCTGAAGGGCCTGAAGAAGATCGTCTACGTCAGCTGCCACCCCGGCTCGCTGGCGCGCGACGCCGGCTGGCTGGTCAACGAGGCCGGCTGGATGCTGCGAGAAGCGGGGGTGATGGACATGTTCCCGCACACCGCGCACGTGGAATCCATCGCGGTGTTCGATCCGCCGAAGAAGAACTGA
PROTEIN sequence
Length: 449
VARLDQTPKTLDVLHLTHDGRGVARWPEGHSQAGKAVFVAGALPGETVSVQQTARSKHFDEAKTLEVLAASPDRVTPRCPHFGVCAGCVLQHLSEDRQIEAKQQVLLDNLQRIGHVAPAAVLPPLRGEAWGYRRKGRLSVRRVEKKDKTLVGFRETDPRFVADLRECHTVIPQLGFKLDALGALVDGMDARRDIPQIEFIAGDAAIALVFRHLQPLSEADRAKLAAFGQAHGFAIFLQPGGNDSVHPLGGEAPQLSFRLPQWDVELLFRPLDFIQVNAKLNEAMIARALDLLDVQPGERVLDLFCGLGNFTLPLARASGDGAVIGVEGDAGLVARARLNAEHNGMGNVQFFAADLAQDLAGQPWLKQGFDKLLLDPARAGAIEVLKQLPLKGLKKIVYVSCHPGSLARDAGWLVNEAGWMLREAGVMDMFPHTAHVESIAVFDPPKKN*