ggKbase home page

cn_combo_scaffold_11335_2

Organism: CN-SCN_Xanthomonadaceae_48x

partial RP 7 / 55 MC: 5 BSCG 10 / 51 MC: 6 ASCG 6 / 38 MC: 3
Location: 519..2150

Top 3 Functional Annotations

Value Algorithm Source
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonad similarity UNIPROT
DB: UniProtKB
  • Identity: 70.1
  • Coverage: 565.0
  • Bit_score: 747
  • Evalue 1.80e-212
Pseudouridine synthase n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UTV5_PSEUP similarity UNIREF
DB: UNIREF100
  • Identity: 66.7
  • Coverage: 553.0
  • Bit_score: 692
  • Evalue 2.90e-196
ribosomal large subunit pseudouridine synthase b (rrna pseudouridylate synthase b) protein similarity KEGG
DB: KEGG
  • Identity: 66.7
  • Coverage: 553.0
  • Bit_score: 692
  • Evalue 8.20e-197

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Lysobacter dokdonensis → Lysobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1632
ATGAGCAATAAGGAAACAACCCGCCGCCCGCTGAGCCTGAAGCGCGCCGCCACCGAAACCGCCGCCGCCCCGCAGATCAGCGAACGCCTGCACAAGGTGCTGGCGCAGGCCGGCCTCGGCTCGCGCCGCGCGCTGGAAGCCCGCATCGCCGACGGTCTGGTCAAGGTCAACGGCGAGGTCGCGCAGACCGGCATGAGCATCACCGGCGGCGACAAGATCGAGATCGACGGCCGCACCTTCGTGGCCAGCGCGCTGACCGATCCGCCGCGCGTGCTGATGTACAACAAGCCGGAAGGCGAAGTGACCACCCGCGAAGACCCCGAAGGCCGCCCGACCATCTTCGACGCACTGCCGTCGCTGAAGGGCGCGCGCTGGATCGCGATCGGCCGCCTCGACATCAACACCACCGGCCTGCTGCTGCTCACCACCGACGGCGAGCTGGCAAACGCGATGATGCATCCCAGCCACGAGGTGGAACGCGAATACGTCTGCCGCGTGCGCGCGCCGGAAGGCGAGGAAACCGTGTCCGACAAGCTGGTCGACCGGCTGGCCCGCGGCGTTGCGCTGGAGGACGGCCCGGCCAAATTCGACGAGATCGAACGCGTGACCGGCGCCAATGCCCCGCAGGAAAGCAGCCACGACTGGTTCCGGGTGCTGCTGAAGGAAGGCCGCAACCGGGAAGTGCGCCGGCTCTGGGAATCGCAGGGCTGCCAGGTCAGCCGCCTCAAGCGCATCCGCTATGGCCAGGTGCGCCTGCCGCAGCCGCTGCTGCGCGGGCACTCGCAGGAGCTGCCGCAGGCCGAGGTCGAGGCGCTGCGCAAGGCGGTCGGGCTGGAAGACGGTACGCCGTCCGCGCTGACGCTGATGCCGGTGCTGGGCCAGCGCAAGGCCGGCAAGACCGTGGTCGCCGGCAACGCCCGTAGCCACGGCTACGTCGGCGGCCACACTACCGCCGATGAAGGCCGCGAACTGCGCCGCTTCGACGCCTTCCGCGAGGATCGCGGTCGCCGCGGCGCCCCCCGCAAGCCCGGTGGCCTGACCGTCAGCGGCGAGATGGCGGCGGCGCAACGCGACAAGCGCCTGAAGGTGAAGGGTCCGCGCCAGCCCGGCCAGCGCATGAAGCCCGGCGAGCAGCGTGGCGAGAATCCGGCGGCGATGCGCACCTGGTTCGTGCCGGATGGCGTGGACACCGGCCCCTCCGGCCACCGCAACCCCGGCCAGCGTGGGCCGAAGAAATTCGGCGACAAGCCCTATGGCGAACGCAGTGGCGGCGCTGGCCGCCCCGGCGGCGGCAAGCCGCGTGGTCCTGGTGCAGGGTTCGGTGGCGACGCCCGCGGCCCGAAGCCGTTCGGTGAGCGCGGCCCGCGCCGCGAGGGCGGACAGGGTGCCGGCGAAGCACGCCCGCAGCGCGCACCCAAGCCCTACGGGCACCCGGGCAATGCACCGCACTTCCCGTCCGACCATGCCCACGGCGGCAGCTTCAATCCCTACGCCACGCAGCAGCAGCGCCCGCGTGGCGGCAAGCCCGGCGGTGGCGGTCGGCCCGGCGGCAATGCCGGCCCCCGCGGTCCGCGTCCGGCAGGCGGCCGGCCCGGCGGTGGCAACCGCGGCCCGCGCAGCGGCAATCGCTGA
PROTEIN sequence
Length: 544
MSNKETTRRPLSLKRAATETAAAPQISERLHKVLAQAGLGSRRALEARIADGLVKVNGEVAQTGMSITGGDKIEIDGRTFVASALTDPPRVLMYNKPEGEVTTREDPEGRPTIFDALPSLKGARWIAIGRLDINTTGLLLLTTDGELANAMMHPSHEVEREYVCRVRAPEGEETVSDKLVDRLARGVALEDGPAKFDEIERVTGANAPQESSHDWFRVLLKEGRNREVRRLWESQGCQVSRLKRIRYGQVRLPQPLLRGHSQELPQAEVEALRKAVGLEDGTPSALTLMPVLGQRKAGKTVVAGNARSHGYVGGHTTADEGRELRRFDAFREDRGRRGAPRKPGGLTVSGEMAAAQRDKRLKVKGPRQPGQRMKPGEQRGENPAAMRTWFVPDGVDTGPSGHRNPGQRGPKKFGDKPYGERSGGAGRPGGGKPRGPGAGFGGDARGPKPFGERGPRREGGQGAGEARPQRAPKPYGHPGNAPHFPSDHAHGGSFNPYATQQQRPRGGKPGGGGRPGGNAGPRGPRPAGGRPGGGNRGPRSGNR*