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cn_combo_scaffold_18960_1

Organism: CN-SCN_Xanthomonadaceae_48x

partial RP 7 / 55 MC: 5 BSCG 10 / 51 MC: 6 ASCG 6 / 38 MC: 3
Location: comp(1..480)

Top 3 Functional Annotations

Value Algorithm Source
transcriptional regulator n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI000366811E similarity UNIREF
DB: UNIREF100
  • Identity: 71.2
  • Coverage: 160.0
  • Bit_score: 242
  • Evalue 3.10e-61
two-component system regulatory protein; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 75.8
  • Coverage: 161.0
  • Bit_score: 247
  • Evalue 1.00e-62
transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 71.2
  • Coverage: 160.0
  • Bit_score: 242
  • Evalue 8.70e-62

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Taxonomy

RIFOXYA1_FULL_Xanthomonadales_68_6_curated → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 480
ATGCAGACCGAGCTCGACCGCTGGTTCGTCCACGAAGTCCTCGTCCACGAGGAGGCGCTGATGCGCTTCCTGCAGCGGCATTGGCCGCACCGCGACGAGCTGCCCGACCTGCGCCAGGAGCTCTACGCGCGCATCTACGAGGCTGGCGCGAAGTCGCGCCCCACCCAGCCGCGGGCCTTCCTGTTCGCCAGCGCGCGCCACCTGATGACCGACCGGCTGCGCCGCGGCAAGGTGGTGTCGATCGAGCCGATGGGTGATTTCGAGCCCTCGCTCGTCTTGGTGGATGAGGTCTCGCCGGAACGCTGGTGCGGCGGCCGGCAGGCCCTGCGCCGGCTGGCCGACGCCTTCGACCGGTTGCCCGACCGCTGCCGGGAGGTGGTCTGGCTGCGGCGGGTGGAGGAGTTGTCGCAAAAGGACGTGGCATCGCGCTTGGGCATCAGCGAGAAAACCGTGGAAAAGCACATCGCCAAGGGCATGCGC
PROTEIN sequence
Length: 160
MQTELDRWFVHEVLVHEEALMRFLQRHWPHRDELPDLRQELYARIYEAGAKSRPTQPRAFLFASARHLMTDRLRRGKVVSIEPMGDFEPSLVLVDEVSPERWCGGRQALRRLADAFDRLPDRCREVVWLRRVEELSQKDVASRLGISEKTVEKHIAKGMR