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cn_combo_scaffold_5230_10

Organism: CN-SCN_Xanthomonadaceae_48x

partial RP 7 / 55 MC: 5 BSCG 10 / 51 MC: 6 ASCG 6 / 38 MC: 3
Location: comp(7105..7680)

Top 3 Functional Annotations

Value Algorithm Source
RpoE n=1 Tax=uncultured bacterium pTW3 RepID=B8PZX9_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 69.8
  • Coverage: 182.0
  • Bit_score: 246
  • Evalue 2.00e-62
Uncharacterized protein {ECO:0000313|EMBL:EYR65823.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici similarity UNIPROT
DB: UniProtKB
  • Identity: 68.3
  • Coverage: 183.0
  • Bit_score: 257
  • Evalue 1.20e-65
RNA polymerase ecf-type sigma factor transcription regulator protein similarity KEGG
DB: KEGG
  • Identity: 64.8
  • Coverage: 193.0
  • Bit_score: 238
  • Evalue 2.00e-60

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Taxonomy

Lysobacter capsici → Lysobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 576
ATGCTGCTGCTGACCCCCGCTAAGCTTGGACCGGTGAACGCCGAAGTCCCGCTGCCCCCGCCTGAGCCGGCCACGCTGGAAGCGTTCCTGCGCGGGATCGAGGCACGCGCCTTCCGCTTCGCCGAGCTTGGCCTGCGCCACCGCGAGGATGCGCTGGACGCGGTGCAGGACGCGATGCTGAAGATGCTGGCCTACCGCGACCGGCCGGCGTCGGAATGGAGCCCGCTGTTCTGGAGCATCCTGCGCAACCGCATGGTGGACATGCAGCGGCGCGGCCTGCTGCGGCTGCGCTGGCTGCTGCCCGGCAGCACCGACCGGGACGGCGAGGCGCTGGACTGGGCCGACGATGCGCCCGATCCCTCGCGCAGCCACGACGGCCGCGAGGCCTGGGAGCGGATCGGAGCCACGCTGCGACGACTGCCTGCCCGCCAGCGCGAAGCCTTCACCCTGCGCGTGCTGGAGGAGTTGGACGTGGCCGACACCGCGCGGGTCATGGGCTGCAGCGAAGGCTCGGTGAAAACGCATCTGTCGCGCGCGCGCGCGGCGCTGCAAAAGCAACTGGAGGACTTCCGATGA
PROTEIN sequence
Length: 192
MLLLTPAKLGPVNAEVPLPPPEPATLEAFLRGIEARAFRFAELGLRHREDALDAVQDAMLKMLAYRDRPASEWSPLFWSILRNRMVDMQRRGLLRLRWLLPGSTDRDGEALDWADDAPDPSRSHDGREAWERIGATLRRLPARQREAFTLRVLEELDVADTARVMGCSEGSVKTHLSRARAALQKQLEDFR*