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cn_combo_scaffold_32_34

Organism: CN-SCN_Rubrivivax_131x

near complete RP 50 / 55 MC: 1 BSCG 49 / 51 ASCG 12 / 38
Location: comp(27535..28545)

Top 3 Functional Annotations

Value Algorithm Source
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 66.8
  • Coverage: 310.0
  • Bit_score: 398
  • Evalue 7.60e-108
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-) similarity KEGG
DB: KEGG
  • Identity: 62.3
  • Coverage: 324.0
  • Bit_score: 393
  • Evalue 4.90e-107
Pseudouridine synthase n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LPJ5_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 66.8
  • Coverage: 310.0
  • Bit_score: 398
  • Evalue 5.40e-108

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Taxonomy

Rubrivivax benzoatilyticus → Rubrivivax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1011
ATGAGCCGCACCCGAGAGGCGCCGGTGCCCGCCGCACCCGAGCGCTCGATCGACGACCCCGAGGCGGCAGCCGAGCCGGACAGCGGCGACGCCGAGCGGCGCGCGTTCGTCGTCGACCTCGAAGGCCATGGCCAGCGCCTGGACCGGCTGCTCGCGCAGGCGGCGCCGGAGTTCTCGCGCAGCCACCTGCAGACGCTGGTGGCCGCCGGGCATGTGCTCGTCGACGCCGCCGCCTGCACGCACAACGCGCGCAAGCTGCGCAGCGGGCAGGCGGTGCAGATCACGCTCGTGCCCACGGCCGAGAGCCGAGCCTTCACGCCGCAGCCGATGGCGCTGGCCATCGTCTACGAGGACGCGCATCTGCTGGTGATCGACAAGCCCGCGGGGCTGGTCGTGCACCCGGCCGCCGGCCACTGGAGCGGCACCCTGCTCAACGGGCTGCTGGCGCACCACGCGGGCGCGGCGCGCCTGGCGCGCGCCGGCATCGTGCACCGACTCGACAAGGACACGTCGGGCCTGATGGTGGTCGGCAAGACGCAGGAGGCGGTGACTGCGCTCTCGCGCGACATCGCCGCGCGCACCGTGCGACGCGAGTACCTGGCGATCGCCTGGGGCGAGGTGCAGGCGGCCACGCAATGCATCGACGCGCCGATCGGCCGCGATCCGGTGCAGCGCACGCGCATGGCGATCGTCGCCGCGGGCCGGTCGGCGCAGACCGTGGTCGAACGCGTGGCCGTGCGCGACGGCTTCTCGGCGCTGCGCTGCCGCCTGCACACCGGACGCACGCACCAGATCCGCGTGCACCTGTCCGCGCGCGGCCATCCGCTGGTGGCCGACGCCTTGTACGGCGGACGTGCGGCGCTCGGGCTGCAGCGCCAGGCCCTGCATGCGACGCTGCTCGCCTTCGAGCATCCGGCCAGCCGCGTGCCGATGTCGTTCCATCGCCCGCCGCCCGCGGACCTGGCCGCAGCGTGGGCGTTCGTTGCCGATCCATCGTCCGCGCTACAATGA
PROTEIN sequence
Length: 337
MSRTREAPVPAAPERSIDDPEAAAEPDSGDAERRAFVVDLEGHGQRLDRLLAQAAPEFSRSHLQTLVAAGHVLVDAAACTHNARKLRSGQAVQITLVPTAESRAFTPQPMALAIVYEDAHLLVIDKPAGLVVHPAAGHWSGTLLNGLLAHHAGAARLARAGIVHRLDKDTSGLMVVGKTQEAVTALSRDIAARTVRREYLAIAWGEVQAATQCIDAPIGRDPVQRTRMAIVAAGRSAQTVVERVAVRDGFSALRCRLHTGRTHQIRVHLSARGHPLVADALYGGRAALGLQRQALHATLLAFEHPASRVPMSFHRPPPADLAAAWAFVADPSSALQ*