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CN-SCN_Rubrivivax_131x

CN-SCN_Burkholderiales_71_127
In projects: CN-SCN  |  SCN_92

Consensus taxonomy: Burkholderiales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 127.39 Longest contig: 347.93 Kbp Bin length: 3.92 Mbp GC content: 70.78 %
Contigs count: 43 Features count: 3678 rRNAs count: 0 tRNAs count: 41

Genome completeness

near complete RP 50 / 55 MC: 1 BSCG 49 / 51 ASCG 12 / 38

Description

Full 50

Displaying 43 items
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_30 RUB134_1
Order: Burkholderiales (78.13%)
320 333641 bp 71.52 133.00 93.56
cn_combo_scaffold_23 RUB134_2
Order: Burkholderiales (78.42%)
292 347930 bp 71.82 132.25 93.85
cn_combo_scaffold_32 RUB134_3
Order: Burkholderiales (82.73%)
220 250819 bp 71.38 128.38 94.29
cn_combo_scaffold_175 RUB134_9
Order: Burkholderiales (71.77%)
209 226645 bp 68.48 136.51 90.82
cn_combo_scaffold_139 RUB134_8
Order: Burkholderiales (78.95%)
190 206836 bp 71.52 131.42 94.25
cn_combo_scaffold_64 RUB134_4
Order: Burkholderiales (75.14%)
185 202409 bp 71.47 128.73 92.67
cn_combo_scaffold_81_fixed
Order: Burkholderiales (67.76%)
183 189510 bp 70.50 1.00 93.92
cn_combo_scaffold_76 RUB134_5
Order: Burkholderiales (74.58%)
177 189835 bp 71.36 135.59 92.60
cn_combo_scaffold_122 RUB134_7
Order: Burkholderiales (78.95%)
152 160329 bp 71.77 134.00 92.12
cn_combo_scaffold_340 RUB134_15
Order: Burkholderiales (82.86%)
140 146316 bp 70.72 130.51 92.51
cn_combo_scaffold_252 RUB134_10
Order: Burkholderiales (73.21%)
112 116645 bp 66.55 143.86 93.37
cn_combo_scaffold_268 RUB134_11
Order: Burkholderiales (85.45%)
110 113362 bp 71.17 138.28 94.02
cn_combo_scaffold_275 RUB134_12
Order: Burkholderiales (81.82%)
110 111628 bp 70.80 137.07 93.23
cn_combo_scaffold_500 RUB134_20
Class: Betaproteobacteria (52.53%)
99 77205 bp 70.45 129.07 96.17
cn_combo_scaffold_355 RUB134_14
Order: Burkholderiales (84.54%)
97 95668 bp 70.68 132.22 94.30
cn_combo_scaffold_474 RUB134_17
Order: Burkholderiales (65.98%)
97 113164 bp 71.34 132.10 93.21
cn_combo_scaffold_341 RUB134_13
Order: Burkholderiales (73.03%)
89 98442 bp 71.09 134.07 93.34
cn_combo_scaffold_499 RUB134_19
Order: Burkholderiales (89.16%)
83 77326 bp 70.05 137.71 93.31
cn_combo_scaffold_486 RUB134_18
Order: Burkholderiales (71.43%)
77 80420 bp 69.31 140.49 91.94
cn_combo_scaffold_414 RUB134_16
Order: Burkholderiales (90.41%)
73 86451 bp 71.03 137.32 94.25
cn_combo_scaffold_785 RUB134_21
Order: Burkholderiales (78.08%)
73 81801 bp 68.73 136.30 89.63
cn_combo_scaffold_984 RUB134_22
Order: Burkholderiales (77.36%)
53 48886 bp 70.90 133.04 88.59
cn_combo_scaffold_2073 RUB134_37
Order: Burkholderiales (85.11%)
47 41906 bp 68.12 140.77 88.67
cn_combo_scaffold_2126 RUB134_28
Order: Burkholderiales (92.68%)
41 43007 bp 71.06 130.59 89.93
cn_combo_scaffold_1187 RUB134_33
Order: Burkholderiales (78.05%)
41 41681 bp 70.91 136.51 92.83
cn_combo_scaffold_1274 RUB134_34
Order: Burkholderiales (82.93%)
41 39726 bp 71.51 130.63 94.99
cn_combo_scaffold_1447 RUB134_24
Genus: Rubrivivax (53.85%)
39 35588 bp 70.48 136.72 89.59
cn_combo_scaffold_1248 RUB134_23
Order: Burkholderiales (88.24%)
34 40330 bp 71.01 131.06 91.67
cn_combo_scaffold_1460 RUB134_25
Order: Burkholderiales (82.35%)
34 37915 bp 70.10 139.04 91.64
cn_combo_scaffold_1480 RUB134_26
Order: Burkholderiales (84.38%)
32 37374 bp 70.18 140.66 91.62
cn_combo_scaffold_2019 RUB134_36
Order: Burkholderiales (60.71%)
28 27070 bp 71.68 135.69 94.26
cn_combo_scaffold_2912 RUB134_30
Order: Burkholderiales (88.89%)
27 27305 bp 71.96 134.44 93.44
cn_combo_scaffold_2036 RUB134_27
Genus: Rubrivivax (52.17%)
23 26883 bp 71.49 129.42 93.03
cn_combo_scaffold_1896 RUB134_35
Order: Burkholderiales (82.61%)
23 28604 bp 72.13 134.02 94.22
cn_combo_scaffold_2827 RUB134_29
Genus: Rubrivivax (52.38%)
21 19884 bp 70.51 134.56 91.84
cn_combo_scaffold_2444 RUB134_38
Order: Burkholderiales (65%)
20 22555 bp 69.72 133.55 90.17
cn_combo_scaffold_2833 RUB134_39
Order: Burkholderiales (72.22%)
18 19868 bp 72.53 134.40 92.18
cn_combo_scaffold_3781 RUB134_41
Order: Burkholderiales (92.86%)
14 15287 bp 71.96 128.80 94.35
cn_combo_scaffold_3578 RUB134_40
Order: Burkholderiales (76.92%)
13 16063 bp 70.96 128.25 88.68
cn_combo_scaffold_4658 RUB134_31
Genus: Rubrivivax (72.73%)
11 12635 bp 67.06 143.07 92.11
cn_combo_scaffold_4999 RUB134_32
Genus: Rubrivivax (54.55%)
11 11753 bp 71.40 129.45 92.10
cn_combo_scaffold_8359 RUB134_44
Order: Burkholderiales (70%)
10 7470 bp 67.68 144.81 83.75
cn_combo_scaffold_7772 RUB134_43
Order: Burkholderiales (77.78%)
9 7959 bp 68.59 134.88 92.54
Displaying 43 items

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.