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cn_combo_scaffold_341

Alias: RUB134_13

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Displaying items 1-30 of 89 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_341_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..337)
DNA (336bp) protein (112aa)
FMN-dependent NADH-azoreductase {ECO:0000256|HAMAP-Rule:MF_01216}; EC=1.7.-.- {ECO:0000256|HAMAP-Rule:MF_01216};; Azo-dye reductase {ECO:0000256|HAMAP-Rule:MF_01216}; FMN-dependent NADH-azo compound o
azoreductase n=1 Tax=Variovorax paradoxus RepID=UPI0003651DFA
putative FMN-dependent NADH-azoreductase
cn_combo_scaffold_341_2
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

457..1374
DNA (918bp) protein (306aa)
LysR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00037E7AFD
LysR family transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:EJL79317.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF31
cn_combo_scaffold_341_3
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1557..3566)
DNA (2010bp) protein (670aa)
Putative cadmium-transporting ATPase {ECO:0000313|EMBL:EWS61542.1}; EC=3.6.3.3 {ECO:0000313|EMBL:EWS61542.1};; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Met
ATPase P n=1 Tax=Comamonas testosteroni RepID=UPI0003688D8C
ATPase P
cn_combo_scaffold_341_4
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3654..4112
DNA (459bp) protein (153aa)
Cd(II)/Pb(II)-responsive transcriptional regulator n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WMF2_9BURK
Mercuric resistance operon regulatory protein {ECO:0000313|EMBL:EWS61543.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp
MerR family transcriptional regulator
cn_combo_scaffold_341_5
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4149..6125)
DNA (1977bp) protein (659aa)
DNA topoisomerase 4 subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_00938};; Topoisomerase IV subunit B {ECO:0000256|HAMAP-Rule:MF_00938}; TaxID=983917 species="Bac
parE; topoisomerase IV subunit B ParE (EC:5.99.1.- 5.99.1.3)
DNA topoisomerase 4 subunit B n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HUX8_RUBGI
cn_combo_scaffold_341_6
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6258..8393)
DNA (2136bp) protein (712aa)
TPR repeat protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HL62_RUBGI
TPR repeat protein Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
TPR repeat protein
cn_combo_scaffold_341_7
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8794..9402
DNA (609bp) protein (203aa)
Glutathione S-transferase domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TRC1_ALIDB
glutathione s-transferase domain-containing protein
Glutathione S-transferase domain-containing protein {ECO:0000313|EMBL:GAO25769.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.
cn_combo_scaffold_341_8
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9366..10682)
DNA (1317bp) protein (439aa)
dadA; D-amino acid dehydrogenase small subunit DadA (EC:1.4.99.1)
D-amino acid dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01202}; EC=1.4.99.1 {ECO:0000256|HAMAP-Rule:MF_01202};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubri
D-amino acid dehydrogenase small subunit n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HUX9_RUBGI
cn_combo_scaffold_341_9
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10793..11980
DNA (1188bp) protein (396aa)
Arabinose efflux permease family protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WQI0_9BURK
Arabinose efflux permease family protein {ECO:0000313|EMBL:EHR71655.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiale
major facilitator superfamily protein
cn_combo_scaffold_341_10
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12039..12881
DNA (843bp) protein (281aa)
Putative carboxymethylenebutenolidase n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W805_MAGSA
putative carboxymethylenebutenolidase
Putative carboxymethylenebutenolidase {ECO:0000313|EMBL:BAO29210.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuri
cn_combo_scaffold_341_11
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12967..13095
DNA (129bp) protein (43aa)
Uncharacterized protein {ECO:0000313|EMBL:EGJ12292.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC
cn_combo_scaffold_341_12
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13086..13679
DNA (594bp) protein (198aa)
Methyltransferase family protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WQI2_9BURK
Methyltransferase family protein {ECO:0000313|EMBL:EHR71657.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
type 11 methyltransferase
cn_combo_scaffold_341_13
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13730..14614
DNA (885bp) protein (295aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086366}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:M
dihydrodipicolinate synthase (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WQI3_9BURK
cn_combo_scaffold_341_14
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14754..15887
DNA (1134bp) protein (378aa)
Uncharacterized protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HUY4_RUBGI
hypothetical protein; K07287 lipoprotein-34 Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
hypothetical protein
cn_combo_scaffold_341_15
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16009..16287)
DNA (279bp) protein (93aa)
Putative uncharacterized protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WQI5_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHR71660.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacter
hypothetical protein
cn_combo_scaffold_341_16
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16467..16991)
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LVC9_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EGJ12297.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC
hypothetical protein
cn_combo_scaffold_341_17
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17033..17569
DNA (537bp) protein (179aa)
putative FKBP-type peptidyl-prolyl cis-trans isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; R
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HUY8_RUBGI
cn_combo_scaffold_341_18
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17616..18065)
DNA (450bp) protein (150aa)
deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule
deoxyuridine 5''''-triphosphate nucleotidohydrolase n=1 Tax=Ideonella sp. B508-1 RepID=UPI0003485E09
cn_combo_scaffold_341_19
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18062..19288)
DNA (1227bp) protein (409aa)
coaBC; phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase CoaB/CoaC (EC:4.1.1.36 6.3.2.5)
Phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase CoaB/CoaC {ECO:0000313|EMBL:BAL96827.1}; EC=4.1.1.36 {ECO:0000313|EMBL:BAL96827.1};; EC=6.3.2.5 {ECO:0000313|EMBL:BAL96
Phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase CoaB/CoaC n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HUZ0_RUBGI
cn_combo_scaffold_341_20
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19326..20189)
DNA (864bp) protein (288aa)
Sec-c motif domain protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LVD4_9BURK
Sec-c motif domain protein {ECO:0000313|EMBL:EGJ12302.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = AT
hypothetical protein
cn_combo_scaffold_341_21
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20261..21679
DNA (1419bp) protein (473aa)
Cytochrome c oxidase accessory protein CcoG n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y803_LEPCP
cytochrome c oxidase accessory protein CcoG Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
cytochrome c oxidase accessory protein CcoG
cn_combo_scaffold_341_22
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21756..22376
DNA (621bp) protein (207aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_0
gmk; guanylate kinase Gmk (EC:2.7.4.8)
Guanylate kinase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WMV2_9BURK
cn_combo_scaffold_341_23
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22406..22609
DNA (204bp) protein (68aa)
rpoZ; DNA-directed RNA polymerase subunit omega RpoZ (EC:2.7.7.6)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-R
DNA-directed RNA polymerase subunit omega n=2 Tax=Rubrivivax RepID=I0HV69_RUBGI
cn_combo_scaffold_341_24
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22741..25053
DNA (2313bp) protein (771aa)
GTP pyrophosphokinase/guanosine-3',5'-bis (Diphosphate) 3'-pyrophosphohydrolase SpoT {ECO:0000313|EMBL:BAL96909.1}; EC=2.7.6.5 {ECO:0000313|EMBL:BAL96909.1};; EC=3.1.7.2 {ECO:0000313|EMBL:BAL96909.1};
spoT; GTP pyrophosphokinase/guanosine-3',5'-bis (diphosphate) 3'-pyrophosphohydrolase SpoT (EC:2.7.6.5 3.1.7.2)
GTP pyrophosphokinase/guanosine-3',5'-bis (Diphosphate) 3'-pyrophosphohydrolase SpoT n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HV72_RUBGI
cn_combo_scaffold_341_25
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25084..25677)
DNA (594bp) protein (198aa)
Transcription elongation factor GreB n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HV73_RUBGI
greB; transcription elongation factor GreB
Transcription elongation factor GreB {ECO:0000256|HAMAP-Rule:MF_00930}; Transcript cleavage factor GreB {ECO:0000256|HAMAP-Rule:MF_00930}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobac
cn_combo_scaffold_341_26
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25701..26258)
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LVK0_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGJ12368.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC
cn_combo_scaffold_341_27
R_Curvibacter_63_18, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26394..28367
DNA (1974bp) protein (658aa)
2-polyprenyl-6-methoxyphenol 4-hydroxylase; K03380 phenol 2-monooxygenase [EC:1.14.13.7] Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
Putative phenol 2-monooxygenase n=1 Tax=Sphingomonas sp. KA1 RepID=Q0KJ81_9SPHN
2-polyprenyl-6-methoxyphenol 4-hydroxylase
cn_combo_scaffold_341_28
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28327..29841)
DNA (1515bp) protein (505aa)
Putative uncharacterized protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y448_LEPCP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB34570.1}; Flags: Precursor;; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodni
cn_combo_scaffold_341_29
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29855..30319)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LUR3_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EGJ12081.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC
hypothetical protein
cn_combo_scaffold_341_30
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30398..32224)
DNA (1827bp) protein (609aa)
General secretory pathway related protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LUR2_9BURK
General secretory pathway related protein {ECO:0000313|EMBL:EGJ12080.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatil
putative secretion pathway ATPase
Displaying items 1-30 of 89 in total

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