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cn_combo_scaffold_1896

Alias: RUB134_35

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
cn_combo_scaffold_1896_1
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(59..721)
DNA (663bp) protein (221aa)
phospholipase D/transphosphatidylase id=12493159 bin=THIO_HI species=Sphingomonas sp. MM-1 genus=Sphingomonas taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:ETF02559.1}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis W13003.;"
phospholipase D/transphosphatidylase
cn_combo_scaffold_1896_2
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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850..1560
DNA (711bp) protein (237aa)
ABC transporter-related protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XZF6_LEPCP
ABC transporter-like protein
ABC transporter-related protein {ECO:0000313|EMBL:ACB36519.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain A
cn_combo_scaffold_1896_3
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1571..3952
DNA (2382bp) protein (794aa)
ABC-type transport system, involved in lipoprotein release, permease component n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WRN8_9BURK
ABC-type transport system, involved in lipoprotein release, permease component {ECO:0000313|EMBL:EHR72818.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Bur
hypothetical protein
cn_combo_scaffold_1896_4
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4004..5209
DNA (1206bp) protein (402aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XZF4_LEPCP
RND family efflux transporter MFP subunit
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ACB36517.1}; Flags: Precursor;; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source=
cn_combo_scaffold_1896_5
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5161..6402)
DNA (1242bp) protein (414aa)
Protein containing von Willebrand factor type A (VWA) domain n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WJ47_9BURK
Protein containing von Willebrand factor type A (VWA) domain {ECO:0000313|EMBL:EHR73691.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderial
vWA domain containing CoxE-like family protein rbh
cn_combo_scaffold_1896_6
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6421..7329)
DNA (909bp) protein (303aa)
MoxR-like ATPase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WJ48_9BURK
coxD; carbon monoxide dehydrogenase, CoxD accessory protein Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
coxD; carbon monoxide dehydrogenase, CoxD accessory protein
cn_combo_scaffold_1896_7
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7413..8195)
DNA (783bp) protein (261aa)
coxM; carbon monoxide dehydrogenase, medium subunit CoxM (EC:1.2.99.2)
Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WJ49_9BURK
Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein {ECO:0000313|EMBL:EHR73693.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;"
cn_combo_scaffold_1896_8
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8212..10569)
DNA (2358bp) protein (786aa)
coxL; carbon monoxide dehydrogenase large chain CoxL (EC:1.2.99.2)
Carbon monoxide dehydrogenase large chain CoxL {ECO:0000313|EMBL:BAL97261.1}; EC=1.2.99.2 {ECO:0000313|EMBL:BAL97261.1};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholder
Carbon monoxide dehydrogenase large chain CoxL n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HW74_RUBGI
cn_combo_scaffold_1896_9
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10586..11053)
DNA (468bp) protein (156aa)
coxS; carbon monoxide dehydrogenase, small subunit CoxS (EC:1.2.99.2)
Carbon monoxide dehydrogenase, small subunit CoxS {ECO:0000313|EMBL:BAL97260.1}; EC=1.2.99.2 {ECO:0000313|EMBL:BAL97260.1};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkhol
Carbon monoxide dehydrogenase, small subunit CoxS n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HW73_RUBGI
cn_combo_scaffold_1896_10
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11244..12248
DNA (1005bp) protein (335aa)
Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WJ50_9BURK
Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family {ECO:0000313|EMBL:EHR73694.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkhol
carbon monoxide dehydrogenase accessory protein
cn_combo_scaffold_1896_11
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12258..13622)
DNA (1365bp) protein (455aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" so
integral membrane sensor signal transduction histidine kinase (EC:2.7.13.3)
Proline sensor PrlS n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LNA3_9BURK
cn_combo_scaffold_1896_12
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13721..14419)
DNA (699bp) protein (233aa)
Two component transcriptional regulator, winged n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LNA4_9BURK
Two component transcriptional regulator, winged {ECO:0000313|EMBL:EGJ09822.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax ben
winged helix family two component transcriptional regulator
cn_combo_scaffold_1896_13
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(14557..15702)
DNA (1146bp) protein (382aa)
Periplasmic molybdate-binding protein/domain protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WJ51_9BURK
Periplasmic molybdate-binding protein/domain protein {ECO:0000313|EMBL:KDB53188.1}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaer
molybdate metabolism transcriptional regulator
cn_combo_scaffold_1896_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15744..16589)
DNA (846bp) protein (282aa)
ABC-type tungstate transport system, permease component n=1 Tax=Variovorax sp. CF313 RepID=J2K5Q8_9BURK
ABC-type tungstate transport system, permease component {ECO:0000313|EMBL:EJL75520.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamona
hypothetical protein
cn_combo_scaffold_1896_15
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16580..17404)
DNA (825bp) protein (275aa)
ABC transporter related protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UZK2_VARPE
ABC transporter-like protein {ECO:0000313|EMBL:KDB53181.1}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. nat
ABC transporter
cn_combo_scaffold_1896_16
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17401..18105)
DNA (705bp) protein (235aa)
ABC-type tungstate transport system, periplasmic component n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WTG8_9BURK
ABC-type tungstate transport system, periplasmic component {ECO:0000313|EMBL:EHR69041.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales
ABC transporter permease
cn_combo_scaffold_1896_17
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18148..19542
DNA (1395bp) protein (465aa)
Molybdenum cofactor synthesis domain protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1XZV2_LEPCP
molybdenum cofactor synthesis domain-containing protein
Molybdenum cofactor synthesis domain protein {ECO:0000313|EMBL:ACB34079.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholod
cn_combo_scaffold_1896_18
unknown

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19616..19936
DNA (321bp) protein (107aa)

This feature has no annotations

cn_combo_scaffold_1896_19
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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19984..22047
DNA (2064bp) protein (688aa)
PAS/PAC sensor hybrid histidine kinase (EC:2.7.13.3)
PAS/PAC sensor hybrid histidine kinase {ECO:0000313|EMBL:BAL97278.1}; EC=2.7.13.3 {ECO:0000313|EMBL:BAL97278.1};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; R
PAS/PAC sensor hybrid histidine kinase n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HW91_RUBGI
cn_combo_scaffold_1896_20
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22066..24615)
DNA (2550bp) protein (850aa)
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WRQ1_9BURK
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB {ECO:0000313|EMBL:EHR72831.1}; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" sou
type II secretion system protein E
cn_combo_scaffold_1896_21
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24880..26463
DNA (1584bp) protein (528aa)
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:KJL17543.1}; EC=6.2.1.3 {ECO:0000313|EMBL:KJL17543.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacte
Uncharacterized protein n=1 Tax=Actinomadura madurae LIID-AJ290 RepID=U2P9I3_9ACTO
AMP-dependent synthetase
cn_combo_scaffold_1896_22
Ilumatobacter coccineus, Ilumatobacter, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

26520..27398
DNA (879bp) protein (293aa)
sulD; dihydroneopterin aldolase/2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3 4.1.2.25)
Dihydroneopterin aldolase/2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase {ECO:0000313|EMBL:BAN01996.1}; EC=2.7.6.3 {ECO:0000313|EMBL:BAN01996.1};; EC=4.1.2.25 {ECO:0000313|EMBL:BA
Dihydroneopterin aldolase/2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=1 Tax=Ilumatobacter coccineus YM16-304 RepID=M5A0S7_9ACTN
cn_combo_scaffold_1896_23
uncultured Gemmatimonadales bacterium HF0200_36I24, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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27368..28213
DNA (846bp) protein (282aa)
Dihydropteroate synthase and related enzymes n=2 Tax=Bacteria RepID=E7C495_9BACT
Dihydropteroate synthase and related enzymes {ECO:0000313|EMBL:ADI22269.1}; TaxID=723614 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; environmental samples.;" source="uncultured Gemmatimonad
dihydropteroate synthase
Displaying 23 items

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