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cn_combo_scaffold_2827_14

Organism: CN-SCN_Rubrivivax_131x

near complete RP 50 / 55 MC: 1 BSCG 49 / 51 ASCG 12 / 38
Location: comp(12621..13247)

Top 3 Functional Annotations

Value Algorithm Source
Type IV pilus transmembrane FimT-like protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HW49_RUBGI similarity UNIREF
DB: UNIREF100
  • Identity: 41.7
  • Coverage: 211.0
  • Bit_score: 132
  • Evalue 5.80e-28
type IV pilus transmembrane FimT-like protein similarity KEGG
DB: KEGG
  • Identity: 41.7
  • Coverage: 211.0
  • Bit_score: 132
  • Evalue 1.60e-28
Type IV pilus transmembrane FimT-like protein {ECO:0000313|EMBL:BAL97236.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelat similarity UNIPROT
DB: UniProtKB
  • Identity: 41.7
  • Coverage: 211.0
  • Bit_score: 132
  • Evalue 8.20e-28

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Taxonomy

Rubrivivax gelatinosus → Rubrivivax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 627
ATGTCGATCATGGCTCGATCGCGGCGCTCAGGCTTCACGTTGATCGAACTGCTGATCGTGGTGGCGATCGCGGCCGTCCTGCTGGCCCTCGTCGCCCCCTCGTTCACCGACATGATCGCCATGCAGCGGCTGCGTGGGGCGCATGATCAACTGGCCACCGACGTGCAGTTCGCGCGCGCCGAGGCGGCGCGCAGGGGCATTCCGGTTCATGTGCGCGTGCAACCGAAATCGCCGAGCGGGCCGGCTTGCTACATCCTGTTCACCGACAAGGGAGCATCCGCCGAATTCCCGTACGCATTCACGATGCCCGCCTGCAATTGCGCCCAACCTCCCGGGTCGCGTTGCAGTGCGGCGGCCACTGCGGAAGTGAAGACGGTGATCCTCGAGGCCTTCACCGGGCTTGACCTCAATCTGGCGGGCACGCCGGTGCTGGATCGGGTGGGATTCGATCCGGCCACCGGCATGCTCTTCGCCCCAGCCCCCGATAGCCCGACGCCCGCACCGGGCGAGTTGGTCGTCGACACGCTGCTCGACTCGGCGCGCCGCATGCGCCTTCAAGTCGGGCGCACAGGCAGGGTTCAGGTCTGTGCCCCCACGGGGTCAACCGTCAAGGCGGTCGCATGCTGA
PROTEIN sequence
Length: 209
MSIMARSRRSGFTLIELLIVVAIAAVLLALVAPSFTDMIAMQRLRGAHDQLATDVQFARAEAARRGIPVHVRVQPKSPSGPACYILFTDKGASAEFPYAFTMPACNCAQPPGSRCSAAATAEVKTVILEAFTGLDLNLAGTPVLDRVGFDPATGMLFAPAPDSPTPAPGELVVDTLLDSARRMRLQVGRTGRVQVCAPTGSTVKAVAC*