| Value | Algorithm | Source | Identity | Coverage | Bit score | Evalue | Cross references |
|---|---|---|---|---|---|---|---|
| RpoD subfamily RNA polymerase sigma-70 subunit | similarity |
KEGG
DB: KEGG |
35.0 | 300.0 | 163 | 1.30e-37 | slp:Slip_1620 |
| RNA polymerase sigma factor n=1 Tax=Syntrophothermus lipocalidus DSM 12680 RepID=D7CNU4_SYNLT (db=UNIREF evalue=2.0e-37 bit_score=162.2 identity=34.8 coverage=93.75) | similarity |
UNIREF
DB: UNIREF |
34.0 | 93.0 | 162 | 2.00e+00 | slp:Slip_1620 |
| RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=638302 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas flue |
UNIPROT
DB: UniProtKB |
36.7 | 289.0 | 161 | 1.80e-36 | C4V565_9FIRM | |
| seg (db=Seg db_id=seg from=51 to=73) | iprscan |
interpro
DB: Seg |
0.0 | 0.0 | 0 | 0.0 | slp:Slip_1620 |
| SIGMA70_2 (db=PatternScan db_id=PS00716 from=258 to=284 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: PatternScan |
0.0 | 0.0 | 0 | 0.0 | slp:Slip_1620 |
| seg (db=Seg db_id=seg from=205 to=218) | iprscan |
interpro
DB: Seg |
0.0 | 0.0 | 0 | 0.0 | slp:Slip_1620 |
| (db=HMMPfam db_id=PF04542 from=63 to=126 evalue=1.0e-06 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
0.0 | 0.0 | 0 | 1.00e+00 | slp:Slip_1620 |
| Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=21 to=133 evalue=2.8e-16 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma fact | iprscan |
interpro
DB: superfamily |
0.0 | 0.0 | 0 | 2.00e+00 | slp:Slip_1620 |
| Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=196 to=290 evalue=2.4e-21 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct | iprscan |
interpro
DB: superfamily |
0.0 | 0.0 | 0 | 2.00e+00 | slp:Slip_1620 |
| sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=55 to=288 evalue=2.6e-17 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169 | iprscan |
interpro
DB: HMMTigr |
0.0 | 0.0 | 0 | 2.00e+00 | slp:Slip_1620 |
| (db=HMMPfam db_id=PF04545 from=234 to=286 evalue=3.8e-19 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
0.0 | 0.0 | 0 | 3.00e+00 | slp:Slip_1620 |
| no description (db=Gene3D db_id=G3DSA:1.10.601.10 from=26 to=129 evalue=5.3e-07) | iprscan |
interpro
DB: Gene3D |
0.0 | 0.0 | 0 | 5.00e+00 | slp:Slip_1620 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=111 to=119 evalue=5.0e-18 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
0.0 | 0.0 | 0 | 5.00e+00 | slp:Slip_1620 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=238 to=250 evalue=5.0e-18 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
0.0 | 0.0 | 0 | 5.00e+00 | slp:Slip_1620 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=258 to=273 evalue=5.0e-18 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
0.0 | 0.0 | 0 | 5.00e+00 | slp:Slip_1620 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=273 to=284 evalue=5.0e-18 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
0.0 | 0.0 | 0 | 5.00e+00 | slp:Slip_1620 |
| Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=136 to=213 evalue=6.6e-07 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct | iprscan |
interpro
DB: superfamily |
0.0 | 0.0 | 0 | 6.00e+00 | slp:Slip_1620 |
| no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=220 to=285 evalue=9.7e-16 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) | iprscan |
interpro
DB: Gene3D |
0.0 | 0.0 | 0 | 9.00e+00 | slp:Slip_1620 |
| (db=HMMPfam db_id=PF00140 from=23 to=57 evalue=9.3e-06 interpro_id=IPR009042 interpro_description=RNA polymerase sigma-70 region 1.2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
0.0 | 0.0 | 0 | 9.00e+00 | slp:Slip_1620 |
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