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AMDSBAU_43

Alias: SULFO_OTHER_43

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBAU_43_1
unknown

Not on your lists

1..228
-----------------
DNA (228bp)
protein (76aa)
1..228 + ( gc_cont=0.491)
AMDSBAU_43_2
unknown

Not on your lists

347..682
-----------------
DNA (336bp)
protein (112aa)
347..682 + ( gc_cont=0.515)
AMDSBAU_43_3
Acidithiobacillus caldus, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

711..1667
-----------------
DNA (957bp)
protein (319aa)
hypothetical protein
seg (db=Seg db_id=seg from=19 to=30)
AMDSBAU_43_4
Mycobacterium phage Sbash, Caudovirales, Viruses

Not on your lists

1870..2757
-----------------
DNA (888bp)
protein (296aa)
Phage protein Gp37/Gp68 n=2 Tax=Leptospira santarosai RepID=M6X746_9LEPT
hypothetical protein
(db=HMMPfam db_id=PF07505 from=4 to=292 evalue=5.6e-89 interpro_id=IPR011101 interpro_description=Burkholderia phage phiE125, Gp37)
AMDSBAU_43_5
unknown

Not on your lists

2912..3130
-----------------
DNA (219bp)
protein (73aa)
seg (db=Seg db_id=seg from=32 to=47)
AMDSBAU_43_6
unknown

Not on your lists

3213..3431
-----------------
DNA (219bp)
protein (73aa)
3213..3431 + ( gc_cont=0.543)
AMDSBAU_43_7
RBG_16_Betaproteobacteria_66_20_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3468..4010
-----------------
DNA (543bp)
protein (181aa)
hypothetical protein
Uncharacterized protein n=2 Tax=Sinorhizobium RepID=K0P1P1_RHIML (db=UNIREF evalue=4.1e-25 bit_score=120.6 identity=52.7 coverage=59.66850828729282)
(db=HMMPfam db_id=PF07799 from=32 to=115 evalue=1.3e-30 interpro_id=IPR012441 interpro_description=Bacteriophage D3, Orf41.6)
AMDSBAU_43_8
Kocuria varians, Kocuria, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4084..5385
-----------------
DNA (1302bp)
protein (434aa)
Modification methylase MvaI n=1 Tax=Micrococcus varians RepID=MTMV_MICVA
Modification methylase MvaI n=1 Tax=Kocuria varians RepID=MTMV_MICVA (db=UNIREF evalue=3.6e-96 bit_score=357.8 identity=46.7 coverage=93.31797235023042)
D12 class N6 adenine-specific DNA methyltransferase
N4_MTASE (db=PatternScan db_id=PS00093 from=258 to=263 evalue=0.0 interpro_id=IPR017985 interpro_description=DNA methylase, N-4 cytosine-specific, conserved site GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: site-specific DNA-methyltransferase (cytosine-N4-specific) activity (GO:0015667), Biological Process: N-4 methylation of cytosine (GO:0090124))
AMDSBAU_43_9
unknown

Not on your lists

5564..6304
-----------------
DNA (741bp)
protein (247aa)
seg (db=Seg db_id=seg from=22 to=36)
seg (db=Seg db_id=seg from=39 to=50)
seg (db=Seg db_id=seg from=122 to=143)
seg (db=Seg db_id=seg from=190 to=200)
AMDSBAU_43_10
unknown

Not on your lists

6356..6658
-----------------
DNA (303bp)
protein (101aa)
6356..6658 + ( gc_cont=0.578)
AMDSBAU_43_11
unknown

Not on your lists

6652..6927
-----------------
DNA (276bp)
protein (92aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=39)
seg (db=Seg db_id=seg from=2 to=19)
AMDSBAU_43_12
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

6947..7927
-----------------
DNA (981bp)
protein (327aa)
Ion transport 2 domain-containing protein
Ion transport 2 domain protein n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LXV1_ACIFD (db=UNIREF evalue=3.5e-43 bit_score=181.4 identity=34.8 coverage=95.41284403669725)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
transmembrane_regions (db=TMHMM db_id=tmhmm from=78 to=100)
AMDSBAU_43_13
unknown

Not on your lists

7988..8425
-----------------
DNA (438bp)
protein (146aa)
seg (db=Seg db_id=seg from=120 to=137)
transmembrane_regions (db=TMHMM db_id=tmhmm from=31 to=53)
AMDSBAU_43_14
unknown

Not on your lists

8453..9097
-----------------
DNA (645bp)
protein (215aa)
8453..9097 + ( gc_cont=0.629)
AMDSBAU_43_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9152..11161
-----------------
DNA (2010bp)
protein (670aa)
macB; macrolide export ATP-binding protein/permease MacB
Macrolide export ATP-binding/permease protein MacB n=2 Tax=Sulfobacillus acidophilus RepID=F8I2U1_SULAT (db=UNIREF evalue=4.2e-176 bit_score=624.0 identity=50.9 coverage=98.35820895522389)
transmembrane_regions (db=TMHMM db_id=tmhmm from=268 to=290)
seg (db=Seg db_id=seg from=182 to=197)
AMDSBAU_43_16
unknown

Not on your lists

11191..11586
-----------------
DNA (396bp)
protein (132aa)
11191..11586 + ( gc_cont=0.629)
AMDSBAU_43_17
unknown

Not on your lists

11711..11929
-----------------
DNA (219bp)
protein (73aa)
seg (db=Seg db_id=seg from=12 to=30)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=21)
(db=HMMPfam db_id=PF09851 from=1 to=63 evalue=2.8e-10 interpro_id=IPR018649 interpro_description=Protein of unknown function DUF2078, membrane)
AMDSBAU_43_18
unknown

Not on your lists

11973..12101
-----------------
DNA (129bp)
protein (43aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=17 to=39)
seg (db=Seg db_id=seg from=22 to=35)
AMDSBAU_43_19
unknown

Not on your lists

12236..12526
-----------------
DNA (291bp)
protein (97aa)
12236..12526 + ( gc_cont=0.550)
AMDSBAU_43_20
unknown

Not on your lists

12571..13131
-----------------
DNA (561bp)
protein (187aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
transmembrane_regions (db=TMHMM db_id=tmhmm from=50 to=72)
transmembrane_regions (db=TMHMM db_id=tmhmm from=79 to=101)
transmembrane_regions (db=TMHMM db_id=tmhmm from=111 to=133)
AMDSBAU_43_21
Dehalobacter sp. CF, Dehalobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13254..13745
-----------------
DNA (492bp)
protein (164aa)
Putative prophage protein (ps3)
Putative prophage protein (Ps3) n=1 Tax=Dehalobacter sp. CF RepID=K4L274_9FIRM (db=UNIREF evalue=4.9e-46 bit_score=189.9 identity=57.2 coverage=91.46341463414635)
AMDSBAU_43_22
unknown

Not on your lists

comp(14068..14241)
-----------------
DNA (174bp)
protein (58aa)
14068..14241 - ( gc_cont=0.557)
AMDSBAU_43_23
BJP_IG2069_Syntrophobacterales_46_30, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14330..15175
-----------------
DNA (846bp)
protein (282aa)
DNA methylase N-4/N-6 domain-containing protein
DNA methylase N-4/N-6 domain protein n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J493_DESDA (db=UNIREF evalue=8.7e-75 bit_score=286.2 identity=51.6 coverage=90.42553191489363)
N6_MTASE (db=PatternScan db_id=PS00092 from=34 to=40 evalue=0.0 interpro_id=IPR002052 interpro_description=DNA methylase, N-6 adenine-specific, conserved site GO=Molecular Function: nucleic acid binding (GO:0003676), Molecular Function: methyltransferase activity (GO:0008168), Biological Process: methylation (GO:0032259))
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=8 to=253 evalue=1.2e-46)
AMDSBAU_43_24
BJP_IG2069_Syntrophobacterales_46_30, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15172..15726
-----------------
DNA (555bp)
protein (185aa)
(db=HMMPfam db_id=PF09195 from=25 to=169 evalue=2.2e-09 interpro_id=IPR015278 interpro_description=Restriction endonuclease, type II, BglII)
Restriction endonuclease-like (db=superfamily db_id=SSF52980 from=1 to=170 evalue=9.2e-13 interpro_id=IPR011335 interpro_description=Restriction endonuclease, type II-like)
AMDSBAU_43_25
Cyanothece sp. PCC 7425, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

16122..16370
-----------------
DNA (249bp)
protein (83aa)
LPBCA THIOREDOXIN n=1 Tax=synthetic construct RepID=UPI0002638C92 (db=UNIREF evalue=1.4e-12 bit_score=77.8 identity=48.0 coverage=86.74698795180723)
thioredoxin
Thioredoxin-like (db=superfamily db_id=SSF52833 from=9 to=81 evalue=1.3e-15 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
no description (db=Gene3D db_id=G3DSA:3.40.30.10 from=9 to=80 evalue=1.5e-11 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
AMDSBAU_43_26
Selenomonas flueggei, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

16484..17395
-----------------
DNA (912bp)
protein (304aa)
RpoD subfamily RNA polymerase sigma-70 subunit
RNA polymerase sigma factor n=1 Tax=Syntrophothermus lipocalidus DSM 12680 RepID=D7CNU4_SYNLT (db=UNIREF evalue=2.0e-37 bit_score=162.2 identity=34.8 coverage=93.75)
seg (db=Seg db_id=seg from=51 to=73)
SIGMA70_2 (db=PatternScan db_id=PS00716 from=258 to=284 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
AMDSBAU_43_27
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

17411..18124
-----------------
DNA (714bp)
protein (238aa)
protein serine/threonine phosphatase
Protein serine/threonine phosphatase n=3 Tax=Alicyclobacillus acidocaldarius RepID=C8WW80_ALIAD (db=UNIREF evalue=5.7e-19 bit_score=100.5 identity=34.7 coverage=71.00840336134453)
seg (db=Seg db_id=seg from=198 to=208)
seg (db=Seg db_id=seg from=43 to=59)
AMDSBAU_43_28
R_OP11_Roizmanbacteria_45_11, Roizmannbacteria, Microgenomates, Bacteria

Not on your lists

18173..18571
-----------------
DNA (399bp)
protein (133aa)
seg (db=Seg db_id=seg from=2 to=25)
AMDSBAU_43_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18571..19017
-----------------
DNA (447bp)
protein (149aa)
18571..19017 + ( gc_cont=0.544)
AMDSBAU_43_30
unknown

Not on your lists

19403..19474
-----------------
DNA (72bp)
protein (24aa)
19403..19474 + ( gc_cont=0.472)
Displaying 30 items

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