| Value | Algorithm | Source | Identity | Coverage | Bit score | Evalue | Cross references |
|---|---|---|---|---|---|---|---|
| RpoD subfamily RNA polymerase sigma-70 subunit; K03086 RNA polymerase primary sigma factor Tax=RBG_13_Chloroflexi_51_36_curated |
UNIPROT
DB: UniProtKB |
90.4 | 335.0 | 592 | 4.60e-166 | ggdbv1_86763031 | |
| RNA polymerase sigma70 | similarity |
KEGG
DB: KEGG |
55.2 | 335.0 | 362 | 1.20e-97 | dmy:X793_02430 |
| RNA polymerase sigma factor n=5 Tax=Dehalococcoides RepID=A5FRQ7_DEHSB (db=UNIREF evalue=0.0 bit_score=356.7 identity=54.6 coverage=99.1044776119403) | similarity |
UNIREF
DB: UNIREF |
54.0 | 99.0 | 356 | 0.0 | dmy:X793_02430 |
| seg (db=Seg db_id=seg from=74 to=84) | iprscan |
interpro
DB: Seg |
0.0 | 0.0 | 0 | 0.0 | dmy:X793_02430 |
| seg (db=Seg db_id=seg from=50 to=62) | iprscan |
interpro
DB: Seg |
0.0 | 0.0 | 0 | 0.0 | dmy:X793_02430 |
| SIGMA70_1 (db=PatternScan db_id=PS00715 from=156 to=169 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: PatternScan |
0.0 | 0.0 | 0 | 0.0 | dmy:X793_02430 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=156 to=169 evalue=1.8e-19 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
0.0 | 0.0 | 0 | 1.00e+00 | dmy:X793_02430 |
| no description (db=Gene3D db_id=G3DSA:1.10.601.10 from=118 to=201 evalue=1.1e-45) | iprscan |
interpro
DB: Gene3D |
0.0 | 0.0 | 0 | 1.00e+00 | dmy:X793_02430 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=326 to=335 evalue=1.8e-19 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
0.0 | 0.0 | 0 | 1.00e+00 | dmy:X793_02430 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=305 to=317 evalue=1.8e-19 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
0.0 | 0.0 | 0 | 1.00e+00 | dmy:X793_02430 |
| sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=127 to=334 evalue=1.8e-11 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016 | iprscan |
interpro
DB: HMMTigr |
0.0 | 0.0 | 0 | 1.00e+00 | dmy:X793_02430 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=180 to=188 evalue=1.8e-19 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
0.0 | 0.0 | 0 | 1.00e+00 | dmy:X793_02430 |
| Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=205 to=280 evalue=2.0e-21 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct | iprscan |
interpro
DB: superfamily |
0.0 | 0.0 | 0 | 2.00e+00 | dmy:X793_02430 |
| Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=263 to=335 evalue=2.0e-15 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct | iprscan |
interpro
DB: superfamily |
0.0 | 0.0 | 0 | 2.00e+00 | dmy:X793_02430 |
| (db=HMMPfam db_id=PF04539 from=211 to=287 evalue=4.4e-23 interpro_id=IPR007624 interpro_description=RNA polymerase sigma-70 region 3 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
0.0 | 0.0 | 0 | 4.00e+00 | dmy:X793_02430 |
| Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=120 to=199 evalue=4.6e-44 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma fac | iprscan |
interpro
DB: superfamily |
0.0 | 0.0 | 0 | 4.00e+00 | dmy:X793_02430 |
| (db=HMMPfam db_id=PF04545 from=301 to=335 evalue=5.3e-08 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
0.0 | 0.0 | 0 | 5.00e+00 | dmy:X793_02430 |
| no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=287 to=335 evalue=6.2e-09 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) | iprscan |
interpro
DB: Gene3D |
0.0 | 0.0 | 0 | 6.00e+00 | dmy:X793_02430 |
| no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=205 to=256 evalue=8.0e-15 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) | iprscan |
interpro
DB: Gene3D |
0.0 | 0.0 | 0 | 8.00e+00 | dmy:X793_02430 |
| (db=HMMPfam db_id=PF04542 from=132 to=201 evalue=8.7e-21 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
0.0 | 0.0 | 0 | 8.00e+00 | dmy:X793_02430 |
Please be patient. You will receive a progress update momentarily.
