| Value | Algorithm | Source | Identity | Coverage | Bit score | Evalue | Cross references |
|---|---|---|---|---|---|---|---|
| RNA polymerase sigma factor; K03086 RNA polymerase primary sigma factor Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated |
UNIPROT
DB: UniProtKB |
100.0 | 422.0 | 834 | 8.80e-239 | ggdbv1_87241617 | |
| RNA polymerase sigma factor n=1 Tax=uncultured Chloroflexi bacterium RepID=H5SM37_9CHLR (db=UNIREF evalue=1.1e-167 bit_score=595.1 identity=75.9 coverage=92.19858156028369) | similarity |
UNIREF
DB: UNIREF |
75.0 | 92.0 | 595 | 1.00e+00 | atm:ANT_18690 |
| RNA polymerase sigma factor | rbh |
KEGG
DB: KEGG |
74.0 | 407.0 | 593 | 4.00e-167 | atm:ANT_18690 |
| RNA polymerase sigma factor | similarity |
KEGG
DB: KEGG |
74.0 | 407.0 | 593 | 4.00e-167 | atm:ANT_18690 |
| coiled-coil (db=Coil db_id=coil from=55 to=83 evalue=NA) | iprscan |
interpro
DB: Coil |
0.0 | 0.0 | 0 | null | atm:ANT_18690 |
| seg (db=Seg db_id=seg from=91 to=114) | iprscan |
interpro
DB: Seg |
0.0 | 0.0 | 0 | 0.0 | atm:ANT_18690 |
| SIGMA70_1 (db=PatternScan db_id=PS00715 from=212 to=225 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: PatternScan |
0.0 | 0.0 | 0 | 0.0 | atm:ANT_18690 |
| SIGMA70_2 (db=PatternScan db_id=PS00716 from=381 to=407 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: PatternScan |
0.0 | 0.0 | 0 | 0.0 | atm:ANT_18690 |
| UniRef90_H5SM37 RNA polymerase sigma factor n=1 Tax=uncultured Chloroflexi bacterium RepID=H5SM37_9CHLR (db=UNIREF) rbh | rbh |
UNIREF
DB: UNIREF |
0.0 | 0.0 | 0 | 0.0 | atm:ANT_18690 |
| (db=HMMPfam db_id=PF03979 from=38 to=105 evalue=1.2e-11 interpro_id=IPR007127 interpro_description=RNA polymerase sigma factor 70, region 1.1 GO=Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription, DNA-dependent (GO:0006355)) | iprscan |
interpro
DB: HMMPfam |
0.0 | 0.0 | 0 | 1.00e+00 | atm:ANT_18690 |
| (db=HMMPfam db_id=PF04542 from=188 to=258 evalue=1.7e-22 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
0.0 | 0.0 | 0 | 1.00e+00 | atm:ANT_18690 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=212 to=225 evalue=1.3e-27 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
0.0 | 0.0 | 0 | 1.00e+00 | atm:ANT_18690 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=236 to=244 evalue=1.3e-27 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
0.0 | 0.0 | 0 | 1.00e+00 | atm:ANT_18690 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=396 to=407 evalue=1.3e-27 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
0.0 | 0.0 | 0 | 1.00e+00 | atm:ANT_18690 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=381 to=396 evalue=1.3e-27 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
0.0 | 0.0 | 0 | 1.00e+00 | atm:ANT_18690 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=360 to=372 evalue=1.3e-27 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
0.0 | 0.0 | 0 | 1.00e+00 | atm:ANT_18690 |
| sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=183 to=411 evalue=2.2e-34 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016 | iprscan |
interpro
DB: HMMTigr |
0.0 | 0.0 | 0 | 2.00e+00 | atm:ANT_18690 |
| (db=HMMPfam db_id=PF00140 from=123 to=158 evalue=2.1e-17 interpro_id=IPR009042 interpro_description=RNA polymerase sigma-70 region 1.2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
0.0 | 0.0 | 0 | 2.00e+00 | atm:ANT_18690 |
| Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=318 to=422 evalue=3.3e-29 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct | iprscan |
interpro
DB: superfamily |
0.0 | 0.0 | 0 | 3.00e+00 | atm:ANT_18690 |
| Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=123 to=258 evalue=3.7e-55 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma fac | iprscan |
interpro
DB: superfamily |
0.0 | 0.0 | 0 | 3.00e+00 | atm:ANT_18690 |
| (db=HMMPfam db_id=PF04545 from=356 to=409 evalue=3.4e-20 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
0.0 | 0.0 | 0 | 3.00e+00 | atm:ANT_18690 |
| no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=261 to=312 evalue=3.2e-12 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) | iprscan |
interpro
DB: Gene3D |
0.0 | 0.0 | 0 | 3.00e+00 | atm:ANT_18690 |
| Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=261 to=335 evalue=4.0e-21 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct | iprscan |
interpro
DB: superfamily |
0.0 | 0.0 | 0 | 4.00e+00 | atm:ANT_18690 |
| (db=HMMPfam db_id=PF04539 from=268 to=343 evalue=4.6e-24 interpro_id=IPR007624 interpro_description=RNA polymerase sigma-70 region 3 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
0.0 | 0.0 | 0 | 4.00e+00 | atm:ANT_18690 |
| no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=342 to=420 evalue=8.7e-25 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) | iprscan |
interpro
DB: Gene3D |
0.0 | 0.0 | 0 | 8.00e+00 | atm:ANT_18690 |
| no description (db=Gene3D db_id=G3DSA:1.10.601.10 from=138 to=257 evalue=8.3e-51) | iprscan |
interpro
DB: Gene3D |
0.0 | 0.0 | 0 | 8.00e+00 | atm:ANT_18690 |
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