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GOSHIP-P18_170_1_13_153S_1017m_2_2158

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
GOSHIP-P18_170_1_13_153S_1017m_2_2158_1
Leptospira yanagawae, Leptospira, Spirochaetia, Spirochaetes, Bacteria

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2..127
-----------------
DNA (126bp)
protein (42aa)
tuf; elongation factor Tu
Elongation factor Tu n=3 Tax=Leptospira RepID=K5BR51_LEPME
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1249483 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira yanagawae serovar Saopaulo str. Sao Paulo = ATCC 700523.;"
GOSHIP-P18_170_1_13_153S_1017m_2_2158_2
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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188..496
-----------------
DNA (309bp)
protein (103aa)
rpsJ; 30S ribosomal subunit protein S10
30S ribosomal protein S10 n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TNY3_TISMK
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=1288970 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" source="Magnetospira sp. QH-2.;"
GOSHIP-P18_170_1_13_153S_1017m_2_2158_3
Thalassospira permensis, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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509..1288
-----------------
DNA (780bp)
protein (260aa)
rplC; 50S ribosomal protein L3
50S ribosomal protein L3 n=1 Tax=Kiloniella laminariae RepID=UPI0003798D2B
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1353532 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira permensis NBRC 106175.;"
GOSHIP-P18_170_1_13_153S_1017m_2_2158_4
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1294..1914
-----------------
DNA (621bp)
protein (207aa)
rplD; 50S ribosomal subunit protein L4
50S ribosomal protein L4 n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4TL16_9RHIZ
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=1288970 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" source="Magnetospira sp. QH-2.;"
GOSHIP-P18_170_1_13_153S_1017m_2_2158_5
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1911..2204
-----------------
DNA (294bp)
protein (98aa)
rplW; 50S ribosomal subunit protein L23
50S ribosomal protein L23 n=1 Tax=alpha proteobacterium BAL199 RepID=A8TZL4_9PROT
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; TaxID=1288970 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" source="Magnetospira sp. QH-2.;"
GOSHIP-P18_170_1_13_153S_1017m_2_2158_6
Pararhodospirillum photometricum, Pararhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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2218..3048
-----------------
DNA (831bp)
protein (277aa)
rplB; 50S ribosomal protein L2
50S ribosomal protein L2 n=1 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SSH2_RHOPH
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320, ECO:0000313|EMBL:CCG07851.1}; TaxID=1150469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Pararhodospirillum.;" source="Rhodospirillum photometricum DSM 122.;"
GOSHIP-P18_170_1_13_153S_1017m_2_2158_7
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3064..3345
-----------------
DNA (282bp)
protein (94aa)
rpsS; 30S ribosomal protein S19
RpsS protein id=3381574 bin=GWA1_Alphaproteobacteria_45_9 species=alpha proteobacterium IMCC14465 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA1_Alphaproteobacteria_45_9 organism_group=Alphaproteobacteria organism_desc=Good marker genes; small
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
GOSHIP-P18_170_1_13_153S_1017m_2_2158_8
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3399..3725
-----------------
DNA (327bp)
protein (109aa)
rplV; 50S ribosomal protein L22
50S ribosomal protein L22 n=1 Tax=alpha proteobacterium IMCC14465 RepID=J9DY94_9PROT
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=1629718 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
GOSHIP-P18_170_1_13_153S_1017m_2_2158_9
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3728..4408
-----------------
DNA (681bp)
protein (227aa)
rpsC; 30S ribosomal protein S3
30S ribosomal protein S3 n=1 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SSH5_RHOPH
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=1629718 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
GOSHIP-P18_170_1_13_153S_1017m_2_2158_10
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4427..4846
-----------------
DNA (420bp)
protein (140aa)
rplP; 50S ribosomal protein L16
50S ribosomal protein L16 n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TNX5_TISMK
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
GOSHIP-P18_170_1_13_153S_1017m_2_2158_11
Hirschia baltica, Hirschia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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4849..5046
-----------------
DNA (198bp)
protein (66aa)
50S ribosomal protein L29
50S ribosomal protein L29 n=1 Tax=Hirschia maritima RepID=UPI000380A572
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=582402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hirschia.;" source="Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418).;"
GOSHIP-P18_170_1_13_153S_1017m_2_2158_12
Acetobacter sp. CAG:977, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5070..5306
-----------------
DNA (237bp)
protein (79aa)
rpsQ; 30S ribosomal protein S17
30S ribosomal protein S17 n=1 Tax=Acetobacter sp. CAG:977 RepID=R5PZA2_9PROT
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=1262685 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter; environmental samples.;" source="Acetobacter sp. CAG:977.;"
GOSHIP-P18_170_1_13_153S_1017m_2_2158_13
Candidatus Puniceispirillum marinum, Candidatus Puniceispirillum, Alphaproteobacteria, Proteobacteria, Bacteria

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5351..5719
-----------------
DNA (369bp)
protein (123aa)
50S ribosomal protein L14 (EC:2.7.2.7)
50S ribosomal protein L14 n=1 Tax=Puniceispirillum marinum (strain IMCC1322) RepID=D5BQC6_PUNMI
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=488538 species="Bacteria; Proteobacteria; Alphaproteobacteria; SAR116 cluster; Candidatus Puniceispirillum.;" source="Puniceispirillum marinum (strain IMCC1322).;"
GOSHIP-P18_170_1_13_153S_1017m_2_2158_14
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5719..6042
-----------------
DNA (324bp)
protein (108aa)
rplX; 50S ribosomal protein L24
50S ribosomal protein L24 n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TNX1_TISMK
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
GOSHIP-P18_170_1_13_153S_1017m_2_2158_15
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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6053..6592
-----------------
DNA (540bp)
protein (180aa)
rplE; 50S ribosomal protein L5
50S ribosomal protein L5 n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FN14_PHAMO
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1150626 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
GOSHIP-P18_170_1_13_153S_1017m_2_2158_16
Labrenzia alexandrii, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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6622..6927
-----------------
DNA (306bp)
protein (102aa)
rpsN; 30S ribosomal protein S14
30S ribosomal protein S14 n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QYP0_9RHOB
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=244592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia alexandrii (strain DSM 17067 / NCIMB 14079 / DFL-11); (Stappia alexandrii).;"
GOSHIP-P18_170_1_13_153S_1017m_2_2158_17
Phaeospirillum fulvum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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6938..7336
-----------------
DNA (399bp)
protein (133aa)
rpsH; 30S ribosomal protein S8
30S ribosomal protein S8 n=1 Tax=Phaeospirillum fulvum MGU-K5 RepID=S9SBV8_PHAFV
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1316936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum fulvum MGU-K5.;"
GOSHIP-P18_170_1_13_153S_1017m_2_2158_18
alpha proteobacterium Q-1, Alphaproteobacteria, Proteobacteria, Bacteria

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7373..7906
-----------------
DNA (534bp)
protein (178aa)
rplF; 50S ribosomal protein L6
50S ribosomal protein L6 n=1 Tax=Thalassospira lucentensis RepID=UPI0003B4BA19
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1492281 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium Q-1.;"
GOSHIP-P18_170_1_13_153S_1017m_2_2158_19
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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7916..8278
-----------------
DNA (363bp)
protein (121aa)
rplR; 50S ribosomal subunit protein L18
50S ribosomal protein L18 n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4U4F7_9PROT
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=55518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense.;"
GOSHIP-P18_170_1_13_153S_1017m_2_2158_20
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8302..8940
-----------------
DNA (639bp)
protein (213aa)
30S ribosomal protein S5
30S ribosomal protein S5 n=1 Tax=Novispirillum itersonii RepID=UPI000371C09C
30S ribosomal protein S5 {ECO:0000255|HAMAP-Rule:MF_01307}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Displaying 20 items

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