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ACD15_22

Alias: ACD15_26502.31543.14

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD15_22_1

Not on your lists

129..851
DNA (723bp) protein (241aa)
seg (db=Seg db_id=seg from=3 to=28)
transmembrane_regions (db=TMHMM db_id=tmhmm from=174 to=196)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=34)
Wzz (db=HMMPfam db_id=PF02706 from=11 to=142 evalue=1.3e-10 interpro_id=IPR003856 interpro_description=Lipopolysaccharide biosynthesis GO=Biological Process: lipopolysaccharide biosynthetic process (GO:0009103), Cellular Component: membrane (GO:0016020))
ACD15_22_2

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962..1855
DNA (894bp) protein (298aa)
seg (db=Seg db_id=seg from=7 to=24)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=22 evalue=6.0)
Uncharacterized protein {ECO:0000313|EMBL:EKE11351.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_22_3

Not on your lists

1852..3144
DNA (1293bp) protein (431aa)
seg (db=Seg db_id=seg from=418 to=429)
seg (db=Seg db_id=seg from=376 to=387)
seg (db=Seg db_id=seg from=63 to=76)
Uncharacterized protein {ECO:0000313|EMBL:EKE11352.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_22_4

Not on your lists

3914..4294
DNA (381bp) protein (127aa)
3914..4294 + (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKE11349.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_22_5

Not on your lists

4464..5906
DNA (1443bp) protein (481aa)
O-antigen polymerase n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PW82_9CLOT (db=UNIREF evalue=2.0e-07 bit_score=60.8 identity=29.61 coverage=29.1060291060291)
transmembrane_regions (db=TMHMM db_id=tmhmm from=434 to=452)
transmembrane_regions (db=TMHMM db_id=tmhmm from=459 to=476)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
ACD15_22_6

Not on your lists

6081..7313
DNA (1233bp) protein (411aa)
Glycosyltransferase
Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6V4_9BACT (db=UNIREF evalue=3.0e-55 bit_score=219.0 identity=38.48 coverage=87.5912408759124)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=2 to=398 evalue=5.0e-52)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526:SF33 from=2 to=398 evalue=5.0e-52)
ACD15_22_7

Not on your lists

7354..8511
DNA (1158bp) protein (386aa)
Glycosyltransferase
coiled-coil (db=Coil db_id=coil from=323 to=344 evalue=NA)
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=1 to=380 evalue=1.5e-68)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=2 to=373 evalue=2.2e-49)
ACD15_22_8

Not on your lists

8521..9585
DNA (1065bp) protein (355aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=167 to=189)
seg (db=Seg db_id=seg from=168 to=188)
Uncharacterized protein {ECO:0000313|EMBL:EKE11326.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_22_9

Not on your lists

9613..10962
DNA (1350bp) protein (450aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
Uncharacterized protein {ECO:0000313|EMBL:EKE11327.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
TPR repeat-containing protein alias=ACD15_C00022G00009,ACD15_26502.31543.14G0009,ACD15_26502.31543.14_9 id=8453 tax=ACD15 species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi organism_group=OD1-i organism_desc=OD1-i
ACD15_22_10

Not on your lists

11088..11849
DNA (762bp) protein (254aa)
seg (db=Seg db_id=seg from=114 to=130)
transmembrane_regions (db=TMHMM db_id=tmhmm from=114 to=136)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
coiled-coil (db=Coil db_id=coil from=213 to=245 evalue=NA)
ACD15_22_11

Not on your lists

11976..12431
DNA (456bp) protein (152aa)
spsL; Spore coat polysaccharide biosynthesis protein SpsL
RmlC-like cupins (db=superfamily db_id=SSF51182 from=1 to=149 evalue=5.2e-39 interpro_id=IPR011051 interpro_description=Cupin, RmlC-type)
DTDP-6-DEOXY-D-GLUCOSE-3,5 EPIMERASE (db=HMMPanther db_id=PTHR21047 from=1 to=149 evalue=8.9e-39 interpro_id=IPR000888 interpro_description=dTDP-4-dehydrorhamnose 3,5-epimerase related GO=Molecular Function: dTDP-4-dehydrorhamnose 3,5-epimerase activity (GO:0008830), Biological Process: lipopolysaccharide biosynthetic process (GO:0009103))
Q43VH6_SOLUS_Q43VH6; (db=BlastProDom db_id=PD001462 from=2 to=146 evalue=1.0e-29 interpro_id=IPR000888 interpro_description=dTDP-4-dehydrorhamnose 3,5-epimerase related GO=Molecular Function: dTDP-4-dehydrorhamnose 3,5-epimerase activity (GO:0008830), Biological Process: lipopolysaccharide biosynthetic process (GO:0009103))
ACD15_22_12

Not on your lists

12527..13531
DNA (1005bp) protein (335aa)
spsJ2; dTDP-glucose 4,6-dehydratase (EC:4.2.1.46)
spsJ2; dTDP-glucose 4,6-dehydratase (EC:4.2.1.46)
dTDP-glucose 4,6-dehydratase n=3 Tax=Geobacillus RepID=Q7BG47_BACST (db=UNIREF evalue=7.0e-118 bit_score=427.0 identity=60.66 coverage=98.8059701492537)
dTDP_gluc_dehyt: dTDP-glucose 4,6-deh (db=HMMTigr db_id=TIGR01181 from=2 to=319 evalue=5.5e-217 interpro_id=IPR005888 interpro_description=dTDP-glucose 4,6-dehydratase GO=Molecular Function: dTDP-glucose 4,6-dehydratase activity (GO:0008460), Biological Process: nucleotide-sugar metabolic process (GO:0009225))
ACD15_22_13

Not on your lists

13541..14497
DNA (957bp) protein (319aa)
rfbD-1; dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133)
seg (db=Seg db_id=seg from=3 to=16)
seg (db=Seg db_id=seg from=230 to=241)
RmlD_sub_bind (db=HMMPfam db_id=PF04321 from=9 to=315 evalue=6.9e-64 interpro_id=IPR005913 interpro_description=dTDP-4-dehydrorhamnose reductase GO=Molecular Function: dTDP-4-dehydrorhamnose reductase activity (GO:0008831), Biological Process: extracellular polysaccharide biosynthetic process (GO:0045226))
ACD15_22_14

Not on your lists

14516..15760
DNA (1245bp) protein (415aa)
glyA; glycine hydroxymethyltransferase (EC:2.1.2.1)
glyA; glycine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLQ3_FIBSS (db=UNIREF evalue=7.0e-135 bit_score=484.0 identity=55.29 coverage=98.5542168674699)
seg (db=Seg db_id=seg from=177 to=192)
ACD15_22_15

Not on your lists

15765..16562
DNA (798bp) protein (266aa)
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MHD0_9FIRM (db=UNIREF evalue=7.0e-72 bit_score=273.0 identity=56.5 coverage=89.8496240601504)
Glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24)
SUGAR-1-PHOSPHATE GUANYL TRANSFERASE (db=HMMPanther db_id=PTHR22572 from=9 to=236 evalue=6.1e-97)
GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (db=HMMPanther db_id=PTHR22572:SF13 from=9 to=236 evalue=6.1e-97)
ACD15_22_16

Not on your lists

16607..17470
DNA (864bp) protein (288aa)
UDP-glucose pyrophosphorylase (EC:2.7.7.9)
GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE (db=HMMPanther db_id=PTHR22572:SF14 from=12 to=287 evalue=7.3e-82)
SUGAR-1-PHOSPHATE GUANYL TRANSFERASE (db=HMMPanther db_id=PTHR22572 from=12 to=287 evalue=7.3e-82)
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=5 to=274 evalue=1.1e-57)
ACD15_22_17

Not on your lists

17471..18586
DNA (1116bp) protein (372aa)
group 1 glycosyl transferase
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=1 to=369 evalue=3.0e-67)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=2 to=369 evalue=1.2e-61)
MANNOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526:SF29 from=2 to=369 evalue=1.2e-61)
ACD15_22_18

Not on your lists

18834..19058
DNA (225bp) protein (75aa)
18834..19058 + (rbs_motif=TAA rbs_spacer=10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE11336.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_22_19

Not on your lists

19073..19255
DNA (183bp) protein (61aa)
19073..19255 + (rbs_motif=TAAT rbs_spacer=13bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE11337.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_22_20

Not on your lists

comp(19340..19735)
DNA (396bp) protein (132aa)
seg (db=Seg db_id=seg from=26 to=38)
transmembrane_regions (db=TMHMM db_id=tmhmm from=105 to=127)
transmembrane_regions (db=TMHMM db_id=tmhmm from=86 to=103)
transmembrane_regions (db=TMHMM db_id=tmhmm from=54 to=76)
ACD15_22_21

Not on your lists

comp(19725..21056)
DNA (1332bp) protein (444aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=24 to=43)
Uncharacterized protein {ECO:0000313|EMBL:EKE11339.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_22_22

Not on your lists

comp(21058..22917)
DNA (1860bp) protein (620aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=435 to=454)
transmembrane_regions (db=TMHMM db_id=tmhmm from=461 to=480)
seg (db=Seg db_id=seg from=198 to=208)
seg (db=Seg db_id=seg from=285 to=299)
ACD15_22_23

Not on your lists

23258..24436
DNA (1179bp) protein (393aa)
group 1 glycosyl transferase
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=2 to=390 evalue=1.2e-49)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=2 to=390 evalue=2.0e-32)
Glycos_transf_1 (db=HMMPfam db_id=PF00534 from=203 to=357 evalue=2.2e-15 interpro_id=IPR001296 interpro_description=Glycosyl transferase, group 1 GO=Biological Process: biosynthetic process (GO:0009058))
ACD15_22_24

Not on your lists

24447..25871
DNA (1425bp) protein (475aa)
hypothetical protein
seg (db=Seg db_id=seg from=21 to=30)
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=39)
Uncharacterized protein {ECO:0000313|EMBL:EKE11342.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_22_25

Not on your lists

25868..27070
DNA (1203bp) protein (401aa)
glycosyltransferase
UDP-Glycosyltransferase/glycogen phosphorylase (db=superfamily db_id=SSF53756 from=38 to=384 evalue=5.9e-19)
GLYCOSYLTRANSFERASE (db=HMMPanther db_id=PTHR12526 from=167 to=395 evalue=2.2e-08)
Glycos_transf_1 (db=HMMPfam db_id=PF00534 from=221 to=370 evalue=7.1e-08 interpro_id=IPR001296 interpro_description=Glycosyl transferase, group 1 GO=Biological Process: biosynthetic process (GO:0009058))
ACD15_22_26

Not on your lists

27073..28050
DNA (978bp) protein (326aa)
wcaG; nucleoside-diphosphate-sugar epimerase
wcaG; nucleoside-diphosphate-sugar epimerase
NAD-dependent epimerase/dehydratase n=1 Tax=Thauera sp. MZ1T RepID=C4KCV1_THASP (db=UNIREF evalue=2.0e-88 bit_score=329.0 identity=51.34 coverage=96.6257668711656)
seg (db=Seg db_id=seg from=268 to=282)
ACD15_22_27

Not on your lists

comp(28125..29609)
DNA (1485bp) protein (495aa)
seg (db=Seg db_id=seg from=462 to=473)
DPP6 N-terminal domain-like (db=superfamily db_id=SSF82171 from=111 to=431 evalue=6.3e-15)
PEGA (db=HMMPfam db_id=PF08308 from=27 to=94 evalue=5.2e-07 interpro_id=IPR013229 interpro_description=PEGA)
Uncharacterized protein {ECO:0000313|EMBL:EKE11345.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_22_28

Not on your lists


29779..30087
DNA (309bp) protein (103aa)
50S ribosomal protein L21
ribosomal protein L21 n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017463FE (db=UNIREF evalue=3.0e-10 bit_score=67.8 identity=53.0 coverage=96.1165048543689)
seg (db=Seg db_id=seg from=75 to=87)
seg (db=Seg db_id=seg from=13 to=33)
ACD15_22_29

Not on your lists

30130..30261
DNA (132bp) protein (44aa)
30130..30261 + (rbs_motif=TAAT rbs_spacer=14bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE11347.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD15_22_30

Not on your lists

30357..31580
DNA (1224bp) protein (408aa)
TIR protein
TIR protein n=1 Tax=Prosthecochloris aestuarii DSM 271 RepID=B4S3R6_PROA2 (db=UNIREF evalue=9.0e-26 bit_score=121.0 identity=32.16 coverage=50.2450980392157)
seg (db=Seg db_id=seg from=250 to=268)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=31)
Displaying 30 items

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