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gwa2_scaffold_132

Alias: zPERA2_38_36_3

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Displaying items 1-30 of 108 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
gwa2_scaffold_132_1
zPERA2_38_36, Peregrinibacteria, Bacteria

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comp(610..1110)
-----------------
DNA (501bp)
protein (167aa)
seg Tax=zPERA2_38_36
seg (db=Seg db_id=seg from=115 to=136)
gwa2_scaffold_132_2
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

1161..2282
-----------------
DNA (1122bp)
protein (374aa)
Carbamoyl-phosphate synthase, small subunit n=1 Tax=Parabacteroides goldsteinii CL02T12C30 RepID=K5ZYS2_9PORP rbh
Carbamoyl-phosphate synthase, small subunit Tax=zPERA2_38_36
carbamoyl phosphate synthase small subunit
seg (db=Seg db_id=seg from=7 to=20)
gwa2_scaffold_132_3
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

2354..3442
-----------------
DNA (1089bp)
protein (363aa)
UPI00020A9D1C related cluster n=1 Tax=unknown RepID=UPI00020A9D1C
Uncharacterized protein {ECO:0000313|EMBL:KKQ71913.1}; TaxID=1619055 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_38_36.;"
extracellular ligand-binding receptor
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
gwa2_scaffold_132_4
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

3442..4308
-----------------
DNA (867bp)
protein (289aa)
Inner-membrane translocator n=1 Tax=Pelodictyon phaeoclathratiforme BU-1 RepID=B4SCM2_PELPB
Inner-membrane translocator Tax=zPERA2_38_36
inner-membrane translocator
seg (db=Seg db_id=seg from=43 to=54)
gwa2_scaffold_132_5
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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4311..5201
-----------------
DNA (891bp)
protein (297aa)
Inner-membrane translocator n=1 Tax=Pelodictyon phaeoclathratiforme BU-1 RepID=B4SCM1_PELPB
Inner-membrane translocator, branched-chain amino acid transport system permease protein {ECO:0000313|EMBL:KKR06816.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria
inner-membrane translocator
seg (db=Seg db_id=seg from=66 to=83)
gwa2_scaffold_132_6
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

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5198..5932
-----------------
DNA (735bp)
protein (245aa)
ABC-type branched-chain amino acid transport system, ATPase component n=1 Tax=Desulfosporosinus youngiae DSM 17734 RepID=H5XUG4_9FIRM
ABC-type branched-chain amino acid transport system, ATPase component, branched-chain amino acid transport system ATP-binding protein {ECO:0000313|EMBL:KKR06817.1}; TaxID=1619062 species="Bacteria; Pe
branched-chain amino acid ABC transporter ATP-binding protein
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=145 to=159 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
gwa2_scaffold_132_7
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

5939..6661
-----------------
DNA (723bp)
protein (241aa)
Putative uncharacterized protein n=1 Tax=Bacillus smithii 7_3_47FAA RepID=G9QIT3_9BACI
Putative uncharacterized protein Tax=zPERA2_38_36
ABC transporter-like protein
seg (db=Seg db_id=seg from=171 to=183)
gwa2_scaffold_132_8
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

6688..7614
-----------------
DNA (927bp)
protein (309aa)
Aspartate carbamoyltransferase n=1 Tax=Caldilinea aerophila DSM 14535 = NBRC 104270 RepID=I0I6L6_CALAS rbh
Aspartate carbamoyltransferase {ECO:0000313|EMBL:KKR06819.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
pyrB; aspartate carbamoyltransferase
seg (db=Seg db_id=seg from=72 to=84)
gwa2_scaffold_132_9
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

7630..8865
-----------------
DNA (1236bp)
protein (412aa)
dihydroorotase (EC:3.5.2.3)
Dihydroorotase, multifunctional complex type n=1 Tax=Fischerella sp. JSC-11 RepID=G6FU92_9CYAN
Dihydroorotase, multifunctional complex type {ECO:0000313|EMBL:KKQ71919.1}; TaxID=1619055 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_38_36.;"
seg (db=Seg db_id=seg from=9 to=28)
gwa2_scaffold_132_10
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

8885..9811
-----------------
DNA (927bp)
protein (309aa)
Dihydroorotate dehydrogenase, dihydroorotate dehydrogenase (Fumarate) {ECO:0000313|EMBL:KKR06821.1}; EC=1.3.98.1 {ECO:0000313|EMBL:KKR06821.1};; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" s
Dihydroorotate dehydrogenase n=1 Tax=Caldilinea aerophila DSM 14535 = NBRC 104270 RepID=I0I5K6_CALAS
pyrD; dihydroorotate dehydrogenase
DHODEHASE_2 (db=PatternScan db_id=PS00912 from=243 to=263 evalue=0.0 interpro_id=IPR001295 interpro_description=Dihydroorotate dehydrogenase, conserved site GO=Molecular Function: dihydroorotate dehydrogenase activity (GO:0004152), Biological Process: 'de novo' pyrimidine base biosynthetic process (GO:0006207), Biological Process: oxidation-reduction process (GO:0055114))
gwa2_scaffold_132_11
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

9882..13553
-----------------
DNA (3672bp)
protein (1224aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR06822.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
coiled-coil (db=Coil db_id=coil from=740 to=761 evalue=NA)
seg (db=Seg db_id=seg from=3 to=27)
gwa2_scaffold_132_12
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(13562..13816)
-----------------
DNA (255bp)
protein (85aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR06823.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
seg (db=Seg db_id=seg from=44 to=67)
gwa2_scaffold_132_13
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

14111..14755
-----------------
DNA (645bp)
protein (215aa)
orotidine 5'-phosphate decarboxylase (EC:2.4.2.10 4.1.1.23)
orotate phosphoribosyltransferase n=1 Tax=Lactobacillus animalis KCTC 3501 RepID=UPI0002194934
Orotate phosphoribosyltransferase {ECO:0000313|EMBL:KKQ71923.1}; TaxID=1619055 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_38_36.;"
(db=HMMPfam db_id=PF00156 from=46 to=141 evalue=5.0e-15 interpro_id=IPR000836 interpro_description=Phosphoribosyltransferase GO=Biological Process: nucleoside metabolic process (GO:0009116))
gwa2_scaffold_132_14
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

14762..15217
-----------------
DNA (456bp)
protein (152aa)
Tax=zPERA2_38_36
gwa2_scaffold_132_15
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

15247..16197
-----------------
DNA (951bp)
protein (317aa)
Orotidine 5''-phosphate decarboxylase, orotidine-5'-phosphate decarboxylase {ECO:0000313|EMBL:KKR06826.1}; EC=4.1.1.23 {ECO:0000313|EMBL:KKR06826.1};; TaxID=1619062 species="Bacteria; Peregrinibacteri
orotidine 5''-phosphate decarboxylase n=1 Tax=Acetivibrio cellulolyticus CD2 RepID=UPI0001E3053E rbh
orotidine 5''-phosphate decarboxylase
OMPDECASE (db=PatternScan db_id=PS00156 from=106 to=119 evalue=0.0 interpro_id=IPR018089 interpro_description=Orotidine 5'-phosphate decarboxylase, active site GO=Molecular Function: orotidine-5'-phosphate decarboxylase activity (GO:0004590), Biological Process: 'de novo' pyrimidine base biosynthetic process (GO:0006207))
gwa2_scaffold_132_16
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

16234..18429
-----------------
DNA (2196bp)
protein (732aa)
Uncharacterized protein {ECO:0000313|EMBL:KKR06827.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
gwa2_scaffold_132_17
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists


comp(18433..19275)
-----------------
DNA (843bp)
protein (281aa)
dimethyladenosine transferase (EC:2.1.1.48)
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TRT7_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:KKR06828.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
RRNA_A_DIMETH (db=PatternScan db_id=PS01131 from=52 to=79 evalue=0.0 interpro_id=IPR020596 interpro_description=Ribosomal RNA adenine methylase transferase, conserved site GO=Biological Process: rRNA modification (GO:0000154), Molecular Function: rRNA (adenine-N6,N6-)-dimethyltransferase activity (GO:0000179), Molecular Function: rRNA methyltransferase activity (GO:0008649))
gwa2_scaffold_132_18
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(19272..19520)
-----------------
DNA (249bp)
protein (83aa)
UPF0235 protein VDG1235_2232 n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JQM1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KKR06829.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
hypothetical protein
(db=HMMPfam db_id=PF02594 from=10 to=80 evalue=1.2e-21 interpro_id=IPR003746 interpro_description=Protein of unknown function DUF167)
gwa2_scaffold_132_19
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(19504..22257)
-----------------
DNA (2754bp)
protein (918aa)
cation-transporting ATPase A (EC:3.6.3.10)
Cation-transporting ATPase A, P type (ATPase, E1-E2 type) n=1 Tax=Halothermothrix orenii H 168 RepID=B8D0K5_HALOH rbh
Cation-transporting ATPase A, P type (ATPase, E1-E2 type) Tax=zPERA2_38_36
ATPASE_E1_E2 (db=PatternScan db_id=PS00154 from=314 to=320 evalue=0.0 interpro_id=IPR018303 interpro_description=ATPase, P-type phosphorylation site)
gwa2_scaffold_132_20
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(22263..22907)
-----------------
DNA (645bp)
protein (215aa)
tRNA (Guanine-n(1)-)-methyltransferase, tRNA (Guanine37-N1)-methyltransferase {ECO:0000313|EMBL:KKR06831.1}; EC=2.1.1.228 {ECO:0000313|EMBL:KKR06831.1};; TaxID=1619062 species="Bacteria; Peregrinibact
trmD; transfer RNA (guanine-N(1)-)-methyltransferase(M1G-methyltransferase) (tRNA [GM37] methyltransferase) (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase n=9 Tax=[Clostridium] difficile RepID=TRMD_CLOD6
seg (db=Seg db_id=seg from=22 to=33)
gwa2_scaffold_132_21
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(22917..23855)
-----------------
DNA (939bp)
protein (313aa)
Caib/baif family protein n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q08VI8_STIAD
Uncharacterized protein {ECO:0000313|EMBL:KKR06832.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
hypothetical protein
gwa2_scaffold_132_22
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists

comp(23997..24653)
-----------------
DNA (657bp)
protein (219aa)
Tax=zPERA2_38_36
gwa2_scaffold_132_23
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

24930..27008
-----------------
DNA (2079bp)
protein (693aa)
Gp7 n=1 Tax=Roseobacter phage SIO1 RepID=Q9G0H8_9CAUD
Uncharacterized protein {ECO:0000313|EMBL:KKR06834.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.;"
coiled-coil (db=Coil db_id=coil from=218 to=239 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
gwa2_scaffold_132_24
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists


comp(27141..27647)
-----------------
DNA (507bp)
protein (169aa)
30S ribosomal protein S9 n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C3741A
30S ribosomal protein S9, small subunit ribosomal protein S9 {ECO:0000313|EMBL:KKR06835.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.
SSU ribosomal protein S9P
RIBOSOMAL_S9 (db=PatternScan db_id=PS00360 from=107 to=125 evalue=0.0 interpro_id=IPR020574 interpro_description=Ribosomal protein S9, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwa2_scaffold_132_25
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists


comp(27651..28097)
-----------------
DNA (447bp)
protein (149aa)
50S ribosomal protein L13 n=1 Tax=Desulfobacca acetoxidans DSM 11109 RepID=F2NBV6_DESAR
50S ribosomal protein L13 {ECO:0000313|EMBL:KKQ71935.1}; TaxID=1619055 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_38_36.;"
50S ribosomal protein L13
no description (db=Gene3D db_id=G3DSA:3.90.1180.10 from=21 to=146 evalue=1.1e-34 interpro_id=IPR023564 interpro_description=Ribosomal protein L13 domain GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwa2_scaffold_132_26
PER_GWF2_38_29, Peregrinibacteria, Bacteria

Not on your lists


comp(28100..28453)
-----------------
DNA (354bp)
protein (118aa)
50S ribosomal protein L17 n=4 Tax=Wolbachia RepID=RL17_WOLPM
rplQ; 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17 Tax=PER_GWF2_38_29
rplQ; ribosomal protein L17
(db=HMMPfam db_id=PF01196 from=20 to=117 evalue=1.4e-21 interpro_id=IPR000456 interpro_description=Ribosomal protein L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
gwa2_scaffold_132_27
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists

comp(28493..29467)
-----------------
DNA (975bp)
protein (325aa)
DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit alpha {ECO:0000313|EMBL:KKR06838.1}; EC=2.7.7.6 {ECO:0000313|EMBL:KKR06838.1};; TaxID=1619062 species="Bacteria; Peregrin
DNA-directed RNA polymerase subunit alpha n=1 Tax=Symbiobacterium thermophilum IAM 14863 RepID=RPOA_SYMTH
DNA-directed RNA polymerase subunit alpha
coiled-coil (db=Coil db_id=coil from=304 to=325 evalue=NA)
gwa2_scaffold_132_28
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists


comp(29511..30143)
-----------------
DNA (633bp)
protein (211aa)
30S ribosomal protein S4 n=1 Tax=Thermosediminibacter oceani DSM 16646 RepID=D9RZN9_THEOJ
30S ribosomal protein S4, small subunit ribosomal protein S4 {ECO:0000313|EMBL:KKR06839.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_14.
30S ribosomal protein S4
RIBOSOMAL_S4 (db=PatternScan db_id=PS00632 from=100 to=124 evalue=0.0 interpro_id=IPR018079 interpro_description=Ribosomal protein S4, conserved site GO=Cellular Component: intracellular (GO:0005622), Molecular Function: rRNA binding (GO:0019843))
gwa2_scaffold_132_29
Peregrinibacteria bacterium GW2011_GWC2_39_14, Peregrinibacteria, Bacteria

Not on your lists


comp(30241..30708)
-----------------
DNA (468bp)
protein (156aa)
30S ribosomal protein S11 n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=RS11_THERP
30S ribosomal protein S11, small subunit ribosomal protein S11 {ECO:0000313|EMBL:KKR06840.1}; TaxID=1619062 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_39_1
rpsK; 30S ribosomal protein S11
RIBOSOMAL_S11 (db=PatternScan db_id=PS00054 from=123 to=145 evalue=0.0 interpro_id=IPR018102 interpro_description=Ribosomal S11, conserved site)
gwa2_scaffold_132_30
zPERA2_38_36, Peregrinibacteria, Bacteria

Not on your lists


comp(30758..31129)
-----------------
DNA (372bp)
protein (124aa)
30S ribosomal protein S13 n=1 Tax=Thermobacillus composti KWC4 RepID=G4EBK0_9BACL
30S ribosomal protein S13 {ECO:0000313|EMBL:KKQ71940.1}; TaxID=1619055 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_38_36.;"
30S ribosomal protein S13
RIBOSOMAL_S13_1 (db=PatternScan db_id=PS00646 from=86 to=99 evalue=0.0 interpro_id=IPR018269 interpro_description=Ribosomal protein S13, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Displaying items 1-30 of 108 in total

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