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S15_scaffold_229_curated_21

Organism: S15_Afipia_broomeae_61_15_curated

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 11 / 38
Location: comp(24129..24665)

Top 3 Functional Annotations

Value Algorithm Source
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.8
  • Coverage: 178.0
  • Bit_score: 347
  • Evalue 8.10e-93
2''''-5'''' RNA ligase n=1 Tax=Afipia birgiae RepID=UPI000303C54A similarity UNIREF
DB: UNIREF100
  • Identity: 98.9
  • Coverage: 178.0
  • Bit_score: 350
  • Evalue 5.20e-94
  • rbh
2',5' RNA ligase similarity KEGG
DB: KEGG
  • Identity: 88.2
  • Coverage: 178.0
  • Bit_score: 315
  • Evalue 5.30e-84
  • rbh

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Taxonomy

Afipia broomeae → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 537
ATGCCGCGCTTGTTTACGGGGTTGGAAATTCCCCCCGATATCGGTCAGACGCTCTCGAACTTGCGGGGCGGGTTGCCCGGGGCGCGCTGGATCGACCCCGAAAATTACCACGTCACATTGCGCTTCATCGGTGACATCGACGGCGCGGCGGCGAGTGAAATCGCCTCGACGCTGGAGCGGATCAACCGCAAACCGTTCGAAGTCGCGTTGCAGGGCCTGTCCAGCTTCGGCGGCAAGAAACCGCGGGCGGTCGTGGCATCGGTTGTACCAAGCCGGCCTCTGATGGAATTGCAGGCGGAACTGGAACGGCTGATGCAGAGGTTCGGTTTCGATCCCGAGGGCCGCAAATTTATCCCCCATGTCACGCTGGCGCGGCTGCGCGACGCCTCCAATCGGGATGTGGCGGATTATCTGTCGGTGCGCGGCTATTTCCCGACCCGCAGCTTCATGGCCTCCCGGTTCGTGCTGTTTTCGTCACGGGCATCGGTGGGCGGTGGACCCTATGTCGTTGAAGACGCCTATGCGCTGAGCGCATAG
PROTEIN sequence
Length: 179
MPRLFTGLEIPPDIGQTLSNLRGGLPGARWIDPENYHVTLRFIGDIDGAAASEIASTLERINRKPFEVALQGLSSFGGKKPRAVVASVVPSRPLMELQAELERLMQRFGFDPEGRKFIPHVTLARLRDASNRDVADYLSVRGYFPTRSFMASRFVLFSSRASVGGGPYVVEDAYALSA*