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S15_scaffold_427_curated_10

Organism: S15_RifCSP_Pseudomonas_62_25_curated

near complete RP 51 / 55 MC: 3 BSCG 51 / 51 MC: 2 ASCG 14 / 38 MC: 1
Location: comp(8212..9162)

Top 3 Functional Annotations

Value Algorithm Source
Sigma factor regulatory protein, FecR/PupR family n=1 Tax=Pseudomonas protegens CHA0 RepID=R4R8C9_9PSED similarity UNIREF
DB: UNIREF100
  • Identity: 90.5
  • Coverage: 316.0
  • Bit_score: 559
  • Evalue 1.70e-156
  • rbh
sigma factor regulatory protein, FecR/PupR family similarity KEGG
DB: KEGG
  • Identity: 90.5
  • Coverage: 316.0
  • Bit_score: 559
  • Evalue 4.90e-157
  • rbh
Sigma factor regulatory protein, FecR/PupR family {ECO:0000313|EMBL:AAY92020.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 90.2
  • Coverage: 316.0
  • Bit_score: 558
  • Evalue 5.40e-156

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Taxonomy

Pseudomonas protegens → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 951
TTGAACATTTTTAGCATCTGCACCCCCCAGGCCTCGGCGGACCCGCAACTGTTGAGGGAAGCCCAGGACTGGCTGGTCCTCCTGACTTCGGGTCGGGCCACCGTGGCCGACGCCCGGGCGCTGCGCCAATGGTGCGCACAAAGCCCGCAGCACGCGGCCGCCTTCGAGCACACCAAGGCCCTGTGGCACTGCCTGCAACCGGCAGCCCAGCAGCTGGAGCAACAGTCCCGGCCCCGGCACTTGGGGCGTCGGGCGTTTCTGGGTGGCGCGATTGCGGCGTCGGCGGCGCTGTTCATGGTGCGGTTCACTGTCCCGGGCGGCTTTGCCGGGCTGACCGCGGATTTCGCCACCGACGTCGGTGAACAGCGGCGGGTGGACCTGGCCGAGGGCGTGAGCCTGGAGCTCAATACCCAGACCCGCATCAGCCGCCGTGACCCGGGCGCGGGCGAGCAGGGCATTGAACTGCTGGAGGGCGAGGTGGAAGTCTTCAGCCACAGCACCCAGGCGCTCAAAGTCCAGGCCGGTGATGGCTGGCTGAGTGCGCGCCAGGCGCGCTTCAATTTGCGCAACACCGATCATCAGGTGTGCGTGACCTGCATCGAAGGCAGCCTGCAAGTGGCAGTGGCGGGGCGCAGCATTCGCCTGGACAGCGGCCGGCAACTGACCTACGACGCCAGGGCGGTGGGCGAGCCGATCGCCGTGGACCCCCGCAGCGTGATCGCCTGGCGCGAGCAGGTGCTGGTGTTCGACAACGCCAGCCTCAACACCGTGATCAGCGAGATCAACCGCTATCGTCCGGGGATGCTGGTGCTGCTCAATGCCGAGTTGGGCCAGCGCAAGGTCCAGGCGCGCTTCAACCTCAACCAGTTGGCGGGTGTGGCCCTGCTGATCCGCGACGCCTATGGCGCCAAATGCACCGAGCTGCCCGGTGGCGTGGTACTGCTCAGCTGA
PROTEIN sequence
Length: 317
LNIFSICTPQASADPQLLREAQDWLVLLTSGRATVADARALRQWCAQSPQHAAAFEHTKALWHCLQPAAQQLEQQSRPRHLGRRAFLGGAIAASAALFMVRFTVPGGFAGLTADFATDVGEQRRVDLAEGVSLELNTQTRISRRDPGAGEQGIELLEGEVEVFSHSTQALKVQAGDGWLSARQARFNLRNTDHQVCVTCIEGSLQVAVAGRSIRLDSGRQLTYDARAVGEPIAVDPRSVIAWREQVLVFDNASLNTVISEINRYRPGMLVLLNAELGQRKVQARFNLNQLAGVALLIRDAYGAKCTELPGGVVLLS*