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S15_scaffold_427_curated_11

Organism: S15_RifCSP_Pseudomonas_62_25_curated

near complete RP 51 / 55 MC: 3 BSCG 51 / 51 MC: 2 ASCG 14 / 38 MC: 1
Location: comp(9201..9746)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor, ECF family n=2 Tax=Pseudomonas protegens RepID=Q4KD30_PSEF5 similarity UNIREF
DB: UNIREF100
  • Identity: 95.6
  • Coverage: 181.0
  • Bit_score: 337
  • Evalue 4.60e-90
  • rbh
RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 95.6
  • Coverage: 181.0
  • Bit_score: 337
  • Evalue 1.30e-90
  • rbh
RNA polymerase sigma-70 factor, ECF family {ECO:0000313|EMBL:AAY92019.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.6
  • Coverage: 181.0
  • Bit_score: 337
  • Evalue 6.50e-90

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Taxonomy

Pseudomonas protegens → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 546
ATGAAAAATACCGCACAGAGTGCGATGGTCAGGCTGTTCCTGACGTCCTACGAGGACTTTCGGGTGCGCTTGCGCAGGCGCCTGGGCTCCGAGGACCTGGCCAACGACGTCCTGCATGAAACCTACTTGCGGGTCGACCGCATGGAAGAGCCGCCCAACCTGCTGCAACCCAATGCCTACCTCTATCGCATGGCCCTGAACATTGCCGCCGACCGCCGCCAGTCCGACGCCCGGCTGCTGACCGGCGACGAGGTCGAGGAACTGCTGCACATCGCCGATGACACCCAGGACCCGTCGCGGGTGGTGGGCGGCCAGAAAGAAATCCAGACCCTGCTCAAAGCCCTCTACGAACTGCCGGCGCGGCGGCGCAAGATCTTTATCGCCGCGCGCCTGGAAGAGGCGCCGCACCTGGAAATTTCCCAGCGTTTCGGCATTTCCACACGGATGGTGGAGAAAGAAATCAAGGCTGCCCTGGGCCATTGCGCCTTGCGCCTTGAAAGAAAAGTCATTCAGCGGTTCGGTCCCGGGGCCGGAAAACTGTCCTAG
PROTEIN sequence
Length: 182
MKNTAQSAMVRLFLTSYEDFRVRLRRRLGSEDLANDVLHETYLRVDRMEEPPNLLQPNAYLYRMALNIAADRRQSDARLLTGDEVEELLHIADDTQDPSRVVGGQKEIQTLLKALYELPARRRKIFIAARLEEAPHLEISQRFGISTRMVEKEIKAALGHCALRLERKVIQRFGPGAGKLS*