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S28_scaffold_1368_curated_3

Organism: S28_Methanosarcina_42_8_curated

near complete RP 33 / 55 MC: 6 BSCG 23 / 51 MC: 3 ASCG 36 / 38 MC: 1
Location: 2484..3293

Top 3 Functional Annotations

Value Algorithm Source
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1434102 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. WH1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.1
  • Coverage: 269.0
  • Bit_score: 515
  • Evalue 3.40e-143
truA; tRNA pseudouridine synthase A (EC:5.4.99.12) similarity KEGG
DB: KEGG
  • Identity: 91.8
  • Coverage: 269.0
  • Bit_score: 503
  • Evalue 2.70e-140
  • rbh
tRNA pseudouridine synthase A n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=TRUA_METAC similarity UNIREF
DB: UNIREF100
  • Identity: 91.8
  • Coverage: 269.0
  • Bit_score: 503
  • Evalue 9.50e-140
  • rbh

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Taxonomy

Methanosarcina sp. WH1 → Methanosarcina → Methanosarcinales → Methanomicrobia → Euryarchaeota → Archaea

Sequences

DNA sequence
Length: 810
ATGAGAGTCGCTTTAAAACTTGCATACATAGGCACTGAGTTTCATGGGTCCCAGATTCAGCCGAATATCGAGACCGTGGAGAAAGAACTCTTCAAAGCTCTTCGGAACCTCAGGCTTATCGAAAGCCCCAAATCTGCTAACTATACATGTGCGGGCAGGACTGATGCCGGGGTTCATGCCCTCGGACAGGTCGTCGCTTTTGATACGGATAAACCCAATCTGGCAATTCCCAGAGTTATCAACTCCGAACTTCCTCCAACCGTGTGGGCATGGGCTCATTCGGAAGTTCCCTTTGATTTCGATGCCAGGAGGAGTGCGGTTTCCAGGCACTACCGTTACGTGATGAGCGGTGAAGGTTACGACATTTCGAAGATCAGGGAAGCTTCAAAATTGCTGCTCGGAACCCATGATTTTGAAAATTTCTCCAGGTCAAACGGAGAAAAAAGTACGGTCCGTACTCTGGAGAGAATCAATGCCCGTGTAGATGGTGAACTTACAAAGATTGACGTCGTCGGCAACAGTTTTCTCTGGAACATGGTACGAAAAATAGTGACCGCTCTTTCAATGATCGGAAAAGGTGTGCGTGATAATGACTGGCTGCTCCAGATGCTGAATCCCAACATTTATGAAGAAGGAATTGAGCCGGCTCCTGCCTATGGGTTAACCCTTATGGGGGTAAACTACGGAGAAAATATAGAATGGATCGAAGACAATTACTCAATCAGGCGGGCAGGTGAGCACAACCATAAACGCATTCTCAGGCACAGGGTCATGGCTGAAGTGCTTGGGGAGTTGATTTCCCGTGAGTGA
PROTEIN sequence
Length: 270
MRVALKLAYIGTEFHGSQIQPNIETVEKELFKALRNLRLIESPKSANYTCAGRTDAGVHALGQVVAFDTDKPNLAIPRVINSELPPTVWAWAHSEVPFDFDARRSAVSRHYRYVMSGEGYDISKIREASKLLLGTHDFENFSRSNGEKSTVRTLERINARVDGELTKIDVVGNSFLWNMVRKIVTALSMIGKGVRDNDWLLQMLNPNIYEEGIEPAPAYGLTLMGVNYGENIEWIEDNYSIRRAGEHNHKRILRHRVMAEVLGELISRE*