ggKbase | Organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 26.77 Longest contig: 64.27 Kbp Bin length: 6.36 Mbp GC content: 63.53 %

Contigs count: 3224 Features count: 8813 rRNAs count: 1 tRNAs count: 79

Genome completeness

partial RP 17 / 55 MC: 3 BSCG 19 / 51 MC: 5 ASCG 5 / 38 MC: 2

Displaying items 1351-1400 of 3224 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
Knockout_Variovorax_02_2024_K_none_B1_day_6_7450 Species: Methylobacterium mesophilicum (50%)	2	1115 bp	67.09	4.04	100.09
Knockout_Variovorax_02_2024_K_none_B1_day_6_7706 Species: Roseobacter sp. MED193 (50%)	2	1086 bp	57.83	4.70	79.56
Knockout_Variovorax_02_2024_K_none_B1_day_6_7962 Species: Mesorhizobium sp. STM 4661 (50%)	2	1054 bp	67.93	3.27	94.21
Knockout_Variovorax_02_2024_K_none_B1_day_6_8474 Species: Burkholderia sp. SJ98 (50%)	2	1001 bp	65.83	5.39	82.72
Knockout_Variovorax_02_2024_K_none_B1_day_6_3867 Species: Acidiphilium cryptum (50%)	2	1938 bp	61.66	6.73	97.52
Knockout_Variovorax_02_2024_K_none_B1_day_6_4891 Species: Grimontia sp. AD028 (50%)	2	1592 bp	61.93	3.77	83.67
Knockout_Variovorax_02_2024_K_none_B1_day_6_3100 Species: Mesorhizobium sp. L103C565B0 (50%)	2	2339 bp	62.21	4.42	81.19
Knockout_Variovorax_02_2024_K_none_B1_day_6_6428 Species: Pimelobacter simplex (50%)	2	1266 bp	66.11	5.09	99.53
Knockout_Variovorax_02_2024_K_none_B1_day_6_7708 Species: Methylobacterium extorquens (50%)	2	1085 bp	63.13	3.04	99.82
Knockout_Variovorax_02_2024_K_none_B1_day_6_7964 Species: RIFOXYA1_FULL_Xanthomonadales_69_10_curated (50%)	2	1054 bp	72.30	4.27	100.47
Knockout_Variovorax_02_2024_K_none_B1_day_6_8220 Species: Brucella sp. BO2 (50%)	2	1025 bp	69.27	4.83	71.71
Knockout_Variovorax_02_2024_K_none_B1_day_6_8476 Species: Mesorhizobium metallidurans (50%)	2	1001 bp	62.34	4.20	69.83
Knockout_Variovorax_02_2024_K_none_B1_day_6_4125 Species: Mesorhizobium sp. L2C084A000 (50%)	2	1831 bp	61.66	3.85	91.43
Knockout_Variovorax_02_2024_K_none_B1_day_6_4893 Species: Bosea sp. LC85 (100%)	2	1592 bp	68.84	4.33	81.97
Knockout_Variovorax_02_2024_K_none_B1_day_6_6173 Species: Streptomyces iranensis (50%)	2	1309 bp	68.91	4.70	101.76
Knockout_Variovorax_02_2024_K_none_B1_day_6_6429 Species: Shinella sp. DD12 (50%)	2	1265 bp	67.98	5.93	100.08
Knockout_Variovorax_02_2024_K_none_B1_day_6_7709 Species: Sinorhizobium medicae (50%)	2	1085 bp	65.35	4.70	83.50
Knockout_Variovorax_02_2024_K_none_B1_day_6_8477 Species: Alicycliphilus denitrificans (50%)	2	1001 bp	71.53	8.24	100.40
Knockout_Variovorax_02_2024_K_none_B1_day_6_1310 Species: Arthrobacter aurescens (50%)	2	5802 bp	62.22	27.38	98.24
Knockout_Variovorax_02_2024_K_none_B1_day_6_3102 Species: Mesorhizobium sp. LSJC280B00 (50%)	2	2338 bp	67.24	4.49	87.13
Knockout_Variovorax_02_2024_K_none_B1_day_6_4638 Species: marine sediment metagenome (50%)	2	1657 bp	67.23	4.89	98.31
Knockout_Variovorax_02_2024_K_none_B1_day_6_5406 Species: bacterium YEK0313 (50%)	2	1467 bp	67.21	4.70	98.98
Knockout_Variovorax_02_2024_K_none_B1_day_6_6430 Species: Ochrobactrum intermedium (50%)	2	1265 bp	61.19	6.40	98.89
Knockout_Variovorax_02_2024_K_none_B1_day_6_6942 Species: Mesorhizobium sp. LSJC264A00 (50%)	2	1179 bp	68.87	3.44	102.80
Knockout_Variovorax_02_2024_K_none_B1_day_6_7198 Species: Thermosynechococcus elongatus (50%)	2	1146 bp	63.26	7.33	94.24
Knockout_Variovorax_02_2024_K_none_B1_day_6_8222 Species: Mesorhizobium sp. SOD10 (50%)	2	1025 bp	64.88	4.24	85.46
Knockout_Variovorax_02_2024_K_none_B1_day_6_2591 Species: Pseudomonas bauzanensis (50%)	2	2742 bp	64.00	5.63	84.68
Knockout_Variovorax_02_2024_K_none_B1_day_6_3103 Species: Rhizobium sp. CF142 (100%)	2	2337 bp	62.22	4.94	90.12
Knockout_Variovorax_02_2024_K_none_B1_day_6_3359 Species: Bosea sp. LC85 (100%)	2	2171 bp	66.74	4.84	102.81
Knockout_Variovorax_02_2024_K_none_B1_day_6_5663 Species: Mesorhizobium amorphae (50%)	2	1407 bp	63.54	3.94	81.24
Knockout_Variovorax_02_2024_K_none_B1_day_6_6431 Species: Mesorhizobium sp. SOD10 (50%)	2	1264 bp	65.98	3.80	84.73
Knockout_Variovorax_02_2024_K_none_B1_day_6_6943 Species: Bosea sp. LC85 (50%)	2	1179 bp	59.29	3.56	70.23
Knockout_Variovorax_02_2024_K_none_B1_day_6_7455 Species: GWF1_Rhodobacteraceae_65_7_curated (50%)	2	1115 bp	64.22	4.04	80.45
Knockout_Variovorax_02_2024_K_none_B1_day_6_7967 Species: Mesorhizobium plurifarium (50%)	2	1054 bp	62.62	3.98	76.28
Knockout_Variovorax_02_2024_K_none_B1_day_6_3104 Species: Azotobacter chroococcum (100%)	2	2337 bp	64.27	5.33	99.23
Knockout_Variovorax_02_2024_K_none_B1_day_6_4128 Species: Beauveria bassiana (50%)	2	1830 bp	70.66	6.39	89.51
Knockout_Variovorax_02_2024_K_none_B1_day_6_6944 Species: Ochrobactrum intermedium (50%)	2	1179 bp	65.06	4.83	100.00
Knockout_Variovorax_02_2024_K_none_B1_day_6_8224 Species: Sinorhizobium meliloti (50%)	2	1024 bp	65.72	4.98	98.73
Knockout_Variovorax_02_2024_K_none_B1_day_6_8480 Species: GWF2_Lentisphaerae_50_93_curated (50%)	2	1001 bp	58.44	3.75	89.91
Knockout_Variovorax_02_2024_K_none_B1_day_6_3873 Species: Frankia alni (50%)	2	1936 bp	67.82	4.26	85.85
Knockout_Variovorax_02_2024_K_none_B1_day_6_4641 Species: Rhizobium leguminosarum (100%)	2	1657 bp	66.02	3.98	97.59
Knockout_Variovorax_02_2024_K_none_B1_day_6_6945 Species: Mesorhizobium sp. LSHC420B00 (50%)	2	1179 bp	68.96	4.33	68.45
Knockout_Variovorax_02_2024_K_none_B1_day_6_7201 Species: Pseudomonas bauzanensis (100%)	2	1146 bp	66.49	5.89	96.34
Knockout_Variovorax_02_2024_K_none_B1_day_6_7969 Species: Mesorhizobium sp. LSHC420B00 (50%)	2	1053 bp	67.33	3.99	100.57
Knockout_Variovorax_02_2024_K_none_B1_day_6_8225 Species: Mesorhizobium plurifarium (50%)	2	1024 bp	63.77	4.25	66.21
Knockout_Variovorax_02_2024_K_none_B1_day_6_8481 Species: Bosea sp. LC85 (100%)	2	1001 bp	66.43	4.50	97.40
Knockout_Variovorax_02_2024_K_none_B1_day_6_4642 Species: Xanthobacter autotrophicus (50%)	2	1657 bp	56.73	4.80	88.90
Knockout_Variovorax_02_2024_K_none_B1_day_6_5666 Species: Burkholderia phytofirmans (50%)	2	1406 bp	64.44	3.73	85.35
Knockout_Variovorax_02_2024_K_none_B1_day_6_5922 Species: Shinella sp. DD12 (50%)	2	1353 bp	62.23	3.55	73.39
Knockout_Variovorax_02_2024_K_none_B1_day_6_7458 Species: Rubellimicrobium mesophilum (50%)	2	1114 bp	56.10	4.58	57.63

Displaying items 1351-1400 of 3224 in total

Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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