ggKbase | Organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 26.77 Longest contig: 64.27 Kbp Bin length: 6.36 Mbp GC content: 63.53 %

Contigs count: 3224 Features count: 8813 rRNAs count: 1 tRNAs count: 79

Genome completeness

partial RP 17 / 55 MC: 3 BSCG 19 / 51 MC: 5 ASCG 5 / 38 MC: 2

Displaying items 1401-1450 of 3224 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
Knockout_Variovorax_02_2024_K_none_B1_day_6_7714 Species: Mesorhizobium sp. L103C120A0 (50%)	2	1085 bp	63.32	4.15	109.22
Knockout_Variovorax_02_2024_K_none_B1_day_6_7970 Species: Bosea sp. LC85 (100%)	2	1053 bp	64.01	4.56	68.09
Knockout_Variovorax_02_2024_K_none_B1_day_6_8482	2	1001 bp	62.04	3.30	89.01
Knockout_Variovorax_02_2024_K_none_B1_day_6_5923 Species: Neorhizobium galegae (50%)	2	1353 bp	61.64	3.10	82.71
Knockout_Variovorax_02_2024_K_none_B1_day_6_6691 Species: RBG_16_Bathyarchaeota_57_9_curated (50%)	2	1219 bp	60.54	3.81	95.98
Knockout_Variovorax_02_2024_K_none_B1_day_6_7459 Species: Bosea sp. LC85 (100%)	2	1114 bp	68.67	3.23	89.95
Knockout_Variovorax_02_2024_K_none_B1_day_6_7971 Species: Klebsiella pneumoniae (50%)	2	1053 bp	64.29	5.13	93.16
Knockout_Variovorax_02_2024_K_none_B1_day_6_8227 Species: Mesorhizobium sp. STM 4661 (50%)	2	1024 bp	66.70	3.22	97.27
Knockout_Variovorax_02_2024_K_none_B1_day_6_5412 Species: Bosea sp. LC85 (100%)	2	1465 bp	70.65	3.58	99.11
Knockout_Variovorax_02_2024_K_none_B1_day_6_6180 Species: Mesorhizobium australicum (50%)	2	1308 bp	66.90	3.44	89.22
Knockout_Variovorax_02_2024_K_none_B1_day_6_6948 Species: Bosea sp. LC85 (50%)	2	1178 bp	69.44	4.84	92.19
Knockout_Variovorax_02_2024_K_none_B1_day_6_7204 Species: marine sediment metagenome (50%)	2	1146 bp	63.18	3.80	100.00
Knockout_Variovorax_02_2024_K_none_B1_day_6_2597 Species: Candidatus Brocadia sinica (50%)	2	2738 bp	59.82	5.09	62.45
Knockout_Variovorax_02_2024_K_none_B1_day_6_4645 Species: RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated (50%)	2	1656 bp	68.18	4.08	93.84
Knockout_Variovorax_02_2024_K_none_B1_day_6_5157 Species: Labrenzia sp. C1B10 (50%)	2	1524 bp	67.85	5.12	100.00
Knockout_Variovorax_02_2024_K_none_B1_day_6_5925 Species: Aquamicrobium defluvii (50%)	2	1353 bp	69.33	5.54	98.67
Knockout_Variovorax_02_2024_K_none_B1_day_6_6437 Species: Pseudomonas bauzanensis (50%)	2	1263 bp	66.83	5.23	84.32
Knockout_Variovorax_02_2024_K_none_B1_day_6_7205 Species: Agrobacterium vitis (50%)	2	1145 bp	59.91	3.67	90.13
Knockout_Variovorax_02_2024_K_none_B1_day_6_7717 Species: Mesorhizobium plurifarium (50%)	2	1084 bp	64.39	3.87	83.86
Knockout_Variovorax_02_2024_K_none_B1_day_6_8485 Species: Nocardioides sp. CF8 (50%)	2	1001 bp	66.33	5.39	100.10
Knockout_Variovorax_02_2024_K_none_B1_day_6_4134 Species: GWF1_Xanthomonadales_69_6_curated (50%)	2	1828 bp	70.95	7.22	79.10
Knockout_Variovorax_02_2024_K_none_B1_day_6_4390 Species: Rhizobium sp. CF080 (100%)	2	1735 bp	60.52	4.15	90.61
Knockout_Variovorax_02_2024_K_none_B1_day_6_4646 Species: Mesorhizobium plurifarium (50%)	2	1656 bp	61.53	4.26	96.20
Knockout_Variovorax_02_2024_K_none_B1_day_6_5670 Species: Mesorhizobium plurifarium (50%)	2	1405 bp	62.78	3.63	84.56
Knockout_Variovorax_02_2024_K_none_B1_day_6_6182 Species: Bosea sp. LC85 (50%)	2	1307 bp	70.85	4.59	100.08
Knockout_Variovorax_02_2024_K_none_B1_day_6_6694 Species: Chelativorans sp. BNC1 (50%)	2	1219 bp	53.73	6.28	64.97
Knockout_Variovorax_02_2024_K_none_B1_day_6_6950 Species: Caulobacter sp. AP07 (50%)	2	1178 bp	69.69	3.44	88.88
Knockout_Variovorax_02_2024_K_none_B1_day_6_7206 Species: Bosea sp. LC85 (50%)	2	1145 bp	69.96	4.85	89.61
Knockout_Variovorax_02_2024_K_none_B1_day_6_8486 Species: Shinella sp. DD12 (50%)	2	1001 bp	59.04	6.89	100.70
Knockout_Variovorax_02_2024_K_none_B1_day_6_2087 Species: Mesorhizobium huakuii (50%)	2	3417 bp	69.27	4.21	92.10
Knockout_Variovorax_02_2024_K_none_B1_day_6_3111 Species: Chelativorans sp. BNC1 (50%)	2	2335 bp	64.58	4.88	99.96
Knockout_Variovorax_02_2024_K_none_B1_day_6_3879 Species: Lutibaculum baratangense (50%)	2	1933 bp	64.51	4.19	74.50
Knockout_Variovorax_02_2024_K_none_B1_day_6_4135 Species: CG_Rhodof_01 (50%)	2	1828 bp	63.57	5.33	95.35
Knockout_Variovorax_02_2024_K_none_B1_day_6_4391 Species: Mesorhizobium metallidurans (50%)	2	1734 bp	67.07	3.63	100.69
Knockout_Variovorax_02_2024_K_none_B1_day_6_7207 Species: Bosea sp. LC85 (50%)	2	1145 bp	67.69	3.93	97.21
Knockout_Variovorax_02_2024_K_none_B1_day_6_7463 Species: Mesorhizobium sp. LSHC420B00 (50%)	2	1114 bp	65.89	4.31	86.71
Knockout_Variovorax_02_2024_K_none_B1_day_6_3368 Species: RBG_16_Chloroflexi_54_18_curated (50%)	2	2169 bp	62.43	4.63	85.34
Knockout_Variovorax_02_2024_K_none_B1_day_6_4136 Species: Ochrobactrum anthropi (50%)	2	1828 bp	63.07	5.91	99.78
Knockout_Variovorax_02_2024_K_none_B1_day_6_4392 Species: Mesorhizobium loti (50%)	2	1734 bp	65.86	4.24	96.54
Knockout_Variovorax_02_2024_K_none_B1_day_6_4648 Species: uncultured bacterium (50%)	2	1655 bp	64.53	5.80	91.00
Knockout_Variovorax_02_2024_K_none_B1_day_6_5160 Species: Lautropia mirabilis (50%)	2	1523 bp	67.17	7.39	91.60
Knockout_Variovorax_02_2024_K_none_B1_day_6_6184 Species: Massilia timonae (50%)	2	1307 bp	60.06	3.44	95.03
Knockout_Variovorax_02_2024_K_none_B1_day_6_6952 Species: Bosea sp. LC85 (100%)	2	1178 bp	70.37	5.09	100.09
Knockout_Variovorax_02_2024_K_none_B1_day_6_7208 Species: Verminephrobacter eiseniae (50%)	2	1145 bp	62.18	6.03	95.37
Knockout_Variovorax_02_2024_K_none_B1_day_6_7464 Species: Pseudomonas bauzanensis (50%)	2	1114 bp	68.22	4.31	97.76
Knockout_Variovorax_02_2024_K_none_B1_day_6_6185 Species: Chloroflexus aurantiacus (50%)	2	1307 bp	67.41	4.93	92.27
Knockout_Variovorax_02_2024_K_none_B1_day_6_6953 Species: Mesorhizobium sp. L2C084A000 (50%)	2	1178 bp	60.70	4.07	84.30
Knockout_Variovorax_02_2024_K_none_B1_day_6_4394 Species: Mesorhizobium ciceri (50%)	2	1734 bp	67.94	4.24	97.40
Knockout_Variovorax_02_2024_K_none_B1_day_6_4650 Species: Nitratireductor indicus (100%)	2	1655 bp	66.77	3.99	100.06
Knockout_Variovorax_02_2024_K_none_B1_day_6_4906 Species: Mesorhizobium sp. LNJC405B00 (50%)	2	1586 bp	60.28	4.26	90.79

Displaying items 1401-1450 of 3224 in total

Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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