ggKbase | Organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 26.77 Longest contig: 64.27 Kbp Bin length: 6.36 Mbp GC content: 63.53 %

Contigs count: 3224 Features count: 8813 rRNAs count: 1 tRNAs count: 79

Genome completeness

partial RP 17 / 55 MC: 3 BSCG 19 / 51 MC: 5 ASCG 5 / 38 MC: 2

Displaying items 1751-1800 of 3224 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
Knockout_Variovorax_02_2024_K_none_B1_day_6_7779 Species: Variovorax paradoxus (50%)	2	1076 bp	63.57	3.35	97.86
Knockout_Variovorax_02_2024_K_none_B1_day_6_1892 Species: Arthrobacter arilaitensis (50%)	2	3770 bp	65.09	15.92	86.90
Knockout_Variovorax_02_2024_K_none_B1_day_6_3428 Species: Bosea sp. LC85 (100%)	2	2123 bp	66.27	3.18	73.06
Knockout_Variovorax_02_2024_K_none_B1_day_6_3940 Species: Hyphomicrobium sp. MC1 (50%)	2	1908 bp	65.20	5.42	99.84
Knockout_Variovorax_02_2024_K_none_B1_day_6_4452 Species: Rhodopseudomonas palustris (50%)	2	1712 bp	67.06	5.43	92.52
Knockout_Variovorax_02_2024_K_none_B1_day_6_4708 Species: Pandoraea pnomenusa (50%)	2	1635 bp	66.06	23.03	99.08
Knockout_Variovorax_02_2024_K_none_B1_day_6_4964 Species: Microvirga lotononidis (50%)	2	1572 bp	65.27	3.63	87.79
Knockout_Variovorax_02_2024_K_none_B1_day_6_5476 Species: Shinella sp. DD12 (50%)	2	1446 bp	64.11	5.39	99.38
Knockout_Variovorax_02_2024_K_none_B1_day_6_7012 Species: Mesorhizobium plurifarium (50%)	2	1169 bp	65.10	3.21	99.83
Knockout_Variovorax_02_2024_K_none_B1_day_6_3173 Species: Rhodobacteraceae bacterium PD-2 (50%)	2	2295 bp	68.45	3.92	95.42
Knockout_Variovorax_02_2024_K_none_B1_day_6_3429 Species: Mesorhizobium plurifarium (50%)	2	2123 bp	67.17	3.74	90.16
Knockout_Variovorax_02_2024_K_none_B1_day_6_5477 Species: Mesorhizobium sp. L103C119B0 (50%)	2	1446 bp	66.18	4.36	94.19
Knockout_Variovorax_02_2024_K_none_B1_day_6_5733 Species: Mesorhizobium sp. STM 4661 (50%)	2	1392 bp	66.31	3.88	70.47
Knockout_Variovorax_02_2024_K_none_B1_day_6_5989 Species: Oceanithermus profundus (50%)	2	1341 bp	66.52	4.03	96.64
Knockout_Variovorax_02_2024_K_none_B1_day_6_6245 Species: Sinorhizobium medicae (50%)	2	1298 bp	57.78	4.74	70.72
Knockout_Variovorax_02_2024_K_none_B1_day_6_6757 Species: Bosea sp. LC85 (100%)	2	1209 bp	66.50	5.21	97.52
Knockout_Variovorax_02_2024_K_none_B1_day_6_7269 Species: Mesorhizobium australicum (50%)	2	1138 bp	66.34	4.22	93.59
Knockout_Variovorax_02_2024_K_none_B1_day_6_7525 Species: Bacillus simplex (50%)	2	1107 bp	64.77	3.66	92.41
Knockout_Variovorax_02_2024_K_none_B1_day_6_8037 Species: Bosea sp. LC85 (100%)	2	1045 bp	67.27	4.02	91.00
Knockout_Variovorax_02_2024_K_none_B1_day_6_6246 Species: Rhodopseudomonas palustris (100%)	2	1298 bp	69.03	4.16	63.33
Knockout_Variovorax_02_2024_K_none_B1_day_6_6502 Species: Bosea sp. LC85 (50%)	2	1252 bp	69.81	2.16	81.95
Knockout_Variovorax_02_2024_K_none_B1_day_6_7014 Species: Mesorhizobium sp. LNHC221B00 (50%)	2	1169 bp	68.78	3.72	96.75
Knockout_Variovorax_02_2024_K_none_B1_day_6_7270 Species: Bradyrhizobium sp. STM 3843 (50%)	2	1137 bp	66.40	3.83	101.06
Knockout_Variovorax_02_2024_K_none_B1_day_6_7782 Species: Afipia sp. P52-10 (50%)	2	1076 bp	65.24	3.49	98.42
Knockout_Variovorax_02_2024_K_none_B1_day_6_4455 Species: Mesorhizobium plurifarium (100%)	2	1711 bp	62.71	3.51	81.71
Knockout_Variovorax_02_2024_K_none_B1_day_6_5991 Species: Mesorhizobium sp. L2C084A000 (100%)	2	1340 bp	68.13	4.25	96.27
Knockout_Variovorax_02_2024_K_none_B1_day_6_6247 Species: Lautropia mirabilis (50%)	2	1298 bp	59.17	4.16	99.85
Knockout_Variovorax_02_2024_K_none_B1_day_6_8295 Species: Sphingomonas wittichii (50%)	2	1018 bp	64.34	3.83	86.94
Knockout_Variovorax_02_2024_K_none_B1_day_6_4456 Species: Rhodovulum sp. PH10 (50%)	2	1711 bp	67.04	4.56	79.95
Knockout_Variovorax_02_2024_K_none_B1_day_6_4712 Species: Pseudomonas bauzanensis (100%)	2	1635 bp	66.73	4.22	99.27
Knockout_Variovorax_02_2024_K_none_B1_day_6_5736 Species: Bosea sp. LC85 (50%)	2	1392 bp	68.10	4.09	95.26
Knockout_Variovorax_02_2024_K_none_B1_day_6_6504 Species: Mesorhizobium ciceri (50%)	2	1251 bp	68.43	3.60	99.52
Knockout_Variovorax_02_2024_K_none_B1_day_6_7272 Species: Nitratireductor indicus (50%)	2	1137 bp	70.45	3.43	100.00
Knockout_Variovorax_02_2024_K_none_B1_day_6_4713 Species: Frankia sp. EUN1f (50%)	2	1634 bp	66.40	4.77	93.27
Knockout_Variovorax_02_2024_K_none_B1_day_6_4969 Species: Ruegeria sp. TM1040 (50%)	2	1569 bp	66.99	3.92	80.69
Knockout_Variovorax_02_2024_K_none_B1_day_6_6249 Species: Mesorhizobium sp. L2C084A000 (50%)	2	1298 bp	62.71	3.58	64.25
Knockout_Variovorax_02_2024_K_none_B1_day_6_6505 Species: Bradyrhizobium sp. DOA9 (50%)	2	1251 bp	62.75	21.46	92.57
Knockout_Variovorax_02_2024_K_none_B1_day_6_7017 Species: Mesorhizobium plurifarium (50%)	2	1168 bp	62.59	3.60	91.44
Knockout_Variovorax_02_2024_K_none_B1_day_6_7529 Species: Pseudomonas stutzeri (50%)	2	1106 bp	71.07	5.42	95.75
Knockout_Variovorax_02_2024_K_none_B1_day_6_8297 Species: Mesorhizobium sp. LNHC220B00 (50%)	2	1018 bp	63.06	4.42	87.52
Knockout_Variovorax_02_2024_K_none_B1_day_6_3946 Species: Citreicella sp. SE45 (50%)	2	1907 bp	59.31	35.16	33.77
Knockout_Variovorax_02_2024_K_none_B1_day_6_4714 Species: Bosea sp. LC85 (100%)	2	1634 bp	68.12	4.31	90.15
Knockout_Variovorax_02_2024_K_none_B1_day_6_6506 Species: Mesorhizobium sp. ORS3324 (50%)	2	1251 bp	65.39	4.08	86.57
Knockout_Variovorax_02_2024_K_none_B1_day_6_7018	2	1168 bp	64.55	4.11	96.58
Knockout_Variovorax_02_2024_K_none_B1_day_6_7274 Species: RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated (50%)	2	1137 bp	66.23	5.80	79.95
Knockout_Variovorax_02_2024_K_none_B1_day_6_7530 Species: Bosea sp. LC85 (100%)	2	1106 bp	69.62	2.98	83.00
Knockout_Variovorax_02_2024_K_none_B1_day_6_8042 Species: Bosea sp. LC85 (50%)	2	1045 bp	65.36	3.73	90.43
Knockout_Variovorax_02_2024_K_none_B1_day_6_3435 Species: CG_Proteo_01 (50%)	2	2118 bp	69.55	6.09	43.06
Knockout_Variovorax_02_2024_K_none_B1_day_6_3947 Species: alpha proteobacterium BAL199 (50%)	2	1906 bp	65.37	3.93	99.95
Knockout_Variovorax_02_2024_K_none_B1_day_6_5739 Species: Bordetella hinzii (50%)	2	1391 bp	73.26	5.61	99.86

Displaying items 1751-1800 of 3224 in total

Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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