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Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

In projects: Knockout_Variovorax_02_2024_K_none_B1_day_6

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 26.77 Longest contig: 64.27 Kbp Bin length: 6.36 Mbp GC content: 63.53 %
Contigs count: 3224 Features count: 8813 rRNAs count: 1 tRNAs count: 79

Genome completeness

partial RP 17 / 55 MC: 3 BSCG 19 / 51 MC: 5 ASCG 5 / 38 MC: 2
Displaying items 1801-1850 of 3224 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
Knockout_Variovorax_02_2024_K_none_B1_day_6_7275
Species: Achromobacter xylosoxidans (50%)
2 1137 bp 70.01 4.49 100.26
Knockout_Variovorax_02_2024_K_none_B1_day_6_8043
Species: Mesorhizobium metallidurans (50%)
2 1045 bp 67.27 3.88 88.71
Knockout_Variovorax_02_2024_K_none_B1_day_6_5740
Species: Paracoccus aminophilus (100%)
2 1391 bp 61.39 5.07 88.64
Knockout_Variovorax_02_2024_K_none_B1_day_6_5996
Species: Bosea sp. LC85 (50%)
2 1340 bp 62.16 5.60 62.91
Knockout_Variovorax_02_2024_K_none_B1_day_6_4461
Species: Pseudomonas alcaligenes (50%)
2 1710 bp 61.52 4.39 53.68
Knockout_Variovorax_02_2024_K_none_B1_day_6_5485
Species: Mesorhizobium huakuii (50%)
2 1445 bp 69.07 3.84 100.48
Knockout_Variovorax_02_2024_K_none_B1_day_6_5997
Species: Shinella sp. DD12 (50%)
2 1340 bp 61.94 6.16 98.06
Knockout_Variovorax_02_2024_K_none_B1_day_6_7277
Species: Mesorhizobium sp. LNHC232B00 (50%)
2 1137 bp 63.94 3.96 58.31
Knockout_Variovorax_02_2024_K_none_B1_day_6_3182
Species: Afipia sp. 1NLS2 (50%)
2 2290 bp 63.28 4.91 100.09
Knockout_Variovorax_02_2024_K_none_B1_day_6_5230
Species: Citreicella sp. 357 (50%)
2 1510 bp 62.19 3.87 89.40
Knockout_Variovorax_02_2024_K_none_B1_day_6_7278
Species: RIFOXYA1_FULL_Xanthomonadales_69_10_curated (50%)
2 1137 bp 71.59 4.49 99.47
Knockout_Variovorax_02_2024_K_none_B1_day_6_8046
Species: Mesorhizobium sp. L2C067A000 (50%)
2 1044 bp 68.10 3.45 100.00
Knockout_Variovorax_02_2024_K_none_B1_day_6_5487
Species: GWA2_Gallionellales_60_142_curated (50%)
2 1444 bp 72.85 4.47 99.93
Knockout_Variovorax_02_2024_K_none_B1_day_6_6255
Species: Ralstonia pickettii (50%)
2 1297 bp 64.92 5.20 68.23
Knockout_Variovorax_02_2024_K_none_B1_day_6_6511
Species: Sodalis praecaptivus (50%)
2 1250 bp 67.36 3.12 96.72
Knockout_Variovorax_02_2024_K_none_B1_day_6_6767
Species: Mesorhizobium sp. LNJC399B00 (50%)
2 1207 bp 66.78 4.47 82.27
Knockout_Variovorax_02_2024_K_none_B1_day_6_7023
Species: Mesorhizobium ciceri (50%)
2 1166 bp 65.87 4.12 99.06
Knockout_Variovorax_02_2024_K_none_B1_day_6_7535
Species: Pseudomonas aeruginosa (50%)
2 1105 bp 60.27 4.75 72.22
Knockout_Variovorax_02_2024_K_none_B1_day_6_8047
Species: Bosea sp. LC85 (50%)
2 1044 bp 60.82 4.89 75.29
Knockout_Variovorax_02_2024_K_none_B1_day_6_4208
Species: RIFOXYA1_FULL_Xanthomonadales_69_10_curated (50%)
2 1804 bp 70.29 6.74 95.95
Knockout_Variovorax_02_2024_K_none_B1_day_6_5488
Species: Bosea sp. LC85 (100%)
2 1444 bp 69.94 3.74 98.48
Knockout_Variovorax_02_2024_K_none_B1_day_6_6000
Species: Paenibacillus mucilaginosus (50%)
2 1339 bp 57.13 3.58 98.36
Knockout_Variovorax_02_2024_K_none_B1_day_6_7280
Species: Aquamicrobium defluvii (100%)
2 1137 bp 62.18 5.94 83.91
Knockout_Variovorax_02_2024_K_none_B1_day_6_7792
Species: Pseudomonas plecoglossicida (50%)
2 1075 bp 66.42 4.47 76.47
Knockout_Variovorax_02_2024_K_none_B1_day_6_8048
Species: Mesorhizobium plurifarium (50%)
2 1044 bp 68.01 4.45 78.74
Knockout_Variovorax_02_2024_K_none_B1_day_6_8304
Species: Nitratireductor indicus (50%)
2 1017 bp 60.57 4.72 102.95
Knockout_Variovorax_02_2024_K_none_B1_day_6_2673
Species: Mesorhizobium sp. ORS3359 (100%)
2 2659 bp 64.27 4.40 94.21
Knockout_Variovorax_02_2024_K_none_B1_day_6_3185
Species: Roseivivax isoporae (50%)
2 2289 bp 64.31 4.59 100.13
Knockout_Variovorax_02_2024_K_none_B1_day_6_5489
Species: Mesorhizobium sp. LNHC232B00 (50%)
2 1444 bp 60.87 4.26 69.18
Knockout_Variovorax_02_2024_K_none_B1_day_6_6769
Species: Novosphingobium tardaugens (50%)
2 1207 bp 65.12 3.85 97.68
Knockout_Variovorax_02_2024_K_none_B1_day_6_8049
Species: Azorhizobium caulinodans (50%)
2 1044 bp 57.85 4.02 93.68
Knockout_Variovorax_02_2024_K_none_B1_day_6_8305
Species: Mesorhizobium sp. L48C026A00 (50%)
2 1017 bp 62.54 4.13 89.09
Knockout_Variovorax_02_2024_K_none_B1_day_6_5490
Species: RBG_16_Acidobacteria_64_8_curated (50%)
2 1444 bp 60.60 4.16 97.02
Knockout_Variovorax_02_2024_K_none_B1_day_6_6002
Species: Mesorhizobium ciceri (50%)
2 1339 bp 65.57 4.14 62.29
Knockout_Variovorax_02_2024_K_none_B1_day_6_6514
Species: Mesorhizobium plurifarium (50%)
2 1249 bp 65.97 4.32 93.92
Knockout_Variovorax_02_2024_K_none_B1_day_6_7026
Species: Methylocella silvestris (50%)
2 1166 bp 65.18 6.43 98.54
Knockout_Variovorax_02_2024_K_none_B1_day_6_3187
Species: Alicycliphilus denitrificans (50%)
2 2288 bp 68.05 10.75 57.69
Knockout_Variovorax_02_2024_K_none_B1_day_6_7539
Species: Agrobacterium tumefaciens (50%)
2 1104 bp 69.02 3.53 93.75
Knockout_Variovorax_02_2024_K_none_B1_day_6_3444
Species: Bermanella marisrubri (50%)
2 2110 bp 66.54 6.54 98.96
Knockout_Variovorax_02_2024_K_none_B1_day_6_3956
Species: Rhizobium sp. CF142 (50%)
2 1904 bp 66.86 3.78 100.05
Knockout_Variovorax_02_2024_K_none_B1_day_6_4468
Species: Pseudovibrio sp. FO-BEG1 (50%)
2 1707 bp 61.98 2.99 88.75
Knockout_Variovorax_02_2024_K_none_B1_day_6_4980
Species: Mesorhizobium plurifarium (50%)
2 1566 bp 67.88 3.54 89.66
Knockout_Variovorax_02_2024_K_none_B1_day_6_5748
Species: Labrenzia aggregata (50%)
2 1390 bp 63.17 5.40 99.71
Knockout_Variovorax_02_2024_K_none_B1_day_6_7284
Species: Mesorhizobium sp. STM 4661 (50%)
2 1136 bp 66.37 3.17 99.56
Knockout_Variovorax_02_2024_K_none_B1_day_6_5237
Species: Bosea sp. WAO (50%)
2 1509 bp 64.15 4.37 99.20
Knockout_Variovorax_02_2024_K_none_B1_day_6_7029
Species: mine drainage metagenome (50%)
2 1166 bp 64.07 3.60 91.08
Knockout_Variovorax_02_2024_K_none_B1_day_6_4470
Species: Cryptosporangium arvum (50%)
2 1707 bp 65.32 4.39 94.38
Knockout_Variovorax_02_2024_K_none_B1_day_6_6006
Species: marine sediment metagenome (50%)
2 1338 bp 63.98 4.04 84.53
Knockout_Variovorax_02_2024_K_none_B1_day_6_7286
Species: Rhodobacteraceae bacterium HTCC2150 (50%)
2 1136 bp 67.08 4.62 79.75
Knockout_Variovorax_02_2024_K_none_B1_day_6_8310
Species: Caulobacter vibrioides (50%)
2 1017 bp 57.72 3.54 46.90
Displaying items 1801-1850 of 3224 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.