ggKbase | Organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 26.77 Longest contig: 64.27 Kbp Bin length: 6.36 Mbp GC content: 63.53 %

Contigs count: 3224 Features count: 8813 rRNAs count: 1 tRNAs count: 79

Genome completeness

partial RP 17 / 55 MC: 3 BSCG 19 / 51 MC: 5 ASCG 5 / 38 MC: 2

Displaying items 1851-1900 of 3224 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
Knockout_Variovorax_02_2024_K_none_B1_day_6_3447 Species: Pseudomonas bauzanensis (100%)	2	2108 bp	64.75	4.27	100.05
Knockout_Variovorax_02_2024_K_none_B1_day_6_3703 Species: Vibrio cyclitrophicus (50%)	2	2005 bp	62.49	9.80	56.86
Knockout_Variovorax_02_2024_K_none_B1_day_6_4983 Species: Agrobacterium rhizogenes (50%)	2	1566 bp	63.03	4.98	92.53
Knockout_Variovorax_02_2024_K_none_B1_day_6_5495 Species: Agrobacterium rhizogenes (50%)	2	1443 bp	57.52	3.33	64.86
Knockout_Variovorax_02_2024_K_none_B1_day_6_7031 Species: Azorhizobium caulinodans (100%)	2	1166 bp	67.24	4.76	98.80
Knockout_Variovorax_02_2024_K_none_B1_day_6_7543 Species: Methylibium petroleiphilum (50%)	2	1104 bp	59.87	3.80	88.04
Knockout_Variovorax_02_2024_K_none_B1_day_6_3704 Species: gamma proteobacterium HdN1 (50%)	2	2004 bp	72.50	5.61	95.96
Knockout_Variovorax_02_2024_K_none_B1_day_6_5240 Species: RIFOXYA1_FULL_Xanthomonadales_69_10_curated (50%)	2	1507 bp	73.39	6.57	80.82
Knockout_Variovorax_02_2024_K_none_B1_day_6_5752 Species: Bosea sp. LC85 (100%)	2	1390 bp	67.41	3.13	79.21
Knockout_Variovorax_02_2024_K_none_B1_day_6_6264 Species: BJP_08E140C01_10KDA_Methylophilales_47_88 (50%)	2	1295 bp	50.81	5.21	97.07
Knockout_Variovorax_02_2024_K_none_B1_day_6_7032 Species: Bosea sp. LC85 (100%)	2	1166 bp	67.24	3.86	100.09
Knockout_Variovorax_02_2024_K_none_B1_day_6_7288 Species: Prunus persica (50%)	2	1136 bp	63.03	7.13	81.87
Knockout_Variovorax_02_2024_K_none_B1_day_6_7544 Species: Mesorhizobium sp. STM 4661 (50%)	2	1104 bp	63.77	4.48	72.55
Knockout_Variovorax_02_2024_K_none_B1_day_6_8056 Species: Bosea sp. LC85 (100%)	2	1043 bp	69.13	7.33	100.10
Knockout_Variovorax_02_2024_K_none_B1_day_6_4473 Species: Aquamicrobium defluvii (50%)	2	1706 bp	64.01	3.96	98.65
Knockout_Variovorax_02_2024_K_none_B1_day_6_5753 Species: Rhodovulum sp. PH10 (50%)	2	1389 bp	61.56	3.67	88.98
Knockout_Variovorax_02_2024_K_none_B1_day_6_7289 Species: Bosea sp. LC85 (100%)	2	1136 bp	71.74	3.70	100.09
Knockout_Variovorax_02_2024_K_none_B1_day_6_7545 Species: RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated (50%)	2	1104 bp	62.95	5.30	100.00
Knockout_Variovorax_02_2024_K_none_B1_day_6_8057 Species: Mesorhizobium sp. L2C084A000 (50%)	2	1043 bp	65.00	4.17	89.45
Knockout_Variovorax_02_2024_K_none_B1_day_6_4474 Species: Rhizobium sp. IRBG74 (100%)	2	1706 bp	61.25	3.08	101.11
Knockout_Variovorax_02_2024_K_none_B1_day_6_5242 Species: Agrobacterium rhizogenes (50%)	2	1507 bp	66.03	4.58	97.74
Knockout_Variovorax_02_2024_K_none_B1_day_6_5754 Species: Leisingera sp. ANG-M1 (50%)	2	1389 bp	66.23	5.62	94.17
Knockout_Variovorax_02_2024_K_none_B1_day_6_6522 Species: Bosea sp. LC85 (100%)	2	1248 bp	68.67	5.29	89.18
Knockout_Variovorax_02_2024_K_none_B1_day_6_4731 Species: Mesorhizobium sp. ORS3359 (50%)	2	1629 bp	65.93	4.42	98.34
Knockout_Variovorax_02_2024_K_none_B1_day_6_5243 Species: uncultured bacterium (50%)	2	1506 bp	58.90	3.59	67.53
Knockout_Variovorax_02_2024_K_none_B1_day_6_5499 Species: Bosea sp. LC85 (50%)	2	1443 bp	63.48	3.43	96.67
Knockout_Variovorax_02_2024_K_none_B1_day_6_7547 Species: Mesorhizobium alhagi (50%)	2	1103 bp	61.02	3.94	83.77
Knockout_Variovorax_02_2024_K_none_B1_day_6_8059 Species: Mesorhizobium sp. LNHC221B00 (50%)	2	1043 bp	68.74	4.31	98.08
Knockout_Variovorax_02_2024_K_none_B1_day_6_8315 Species: Bosea sp. LC85 (100%)	2	1016 bp	68.90	3.84	77.95
Knockout_Variovorax_02_2024_K_none_B1_day_6_2684 Species: Mesorhizobium loti (50%)	2	2652 bp	63.54	4.36	75.00
Knockout_Variovorax_02_2024_K_none_B1_day_6_3708 Species: Kineosphaera limosa (50%)	2	2003 bp	68.30	3.89	95.56
Knockout_Variovorax_02_2024_K_none_B1_day_6_6268 Species: Taylorella equigenitalis (50%)	2	1295 bp	61.24	6.14	76.22
Knockout_Variovorax_02_2024_K_none_B1_day_6_6524 Species: Myxococcus fulvus (50%)	2	1248 bp	73.24	7.33	99.52
Knockout_Variovorax_02_2024_K_none_B1_day_6_7292 Species: Mesorhizobium sp. LSJC264A00 (50%)	2	1135 bp	65.20	3.70	93.30
Knockout_Variovorax_02_2024_K_none_B1_day_6_2429 Species: Mesorhizobium sp. LNHC221B00 (50%)	2	2909 bp	61.64	4.43	83.64
Knockout_Variovorax_02_2024_K_none_B1_day_6_3709 Species: Sphingobium ummariense (50%)	2	2002 bp	61.94	5.09	99.35
Knockout_Variovorax_02_2024_K_none_B1_day_6_5245 Species: Mesorhizobium sp. ORS3324 (50%)	2	1506 bp	63.81	4.18	88.84
Knockout_Variovorax_02_2024_K_none_B1_day_6_5757 Species: Mycobacterium vaccae (50%)	2	1389 bp	64.00	7.02	100.00
Knockout_Variovorax_02_2024_K_none_B1_day_6_6525 Species: Xanthobacter autotrophicus (50%)	2	1248 bp	66.35	4.09	89.18
Knockout_Variovorax_02_2024_K_none_B1_day_6_7293 Species: Burkholderia andropogonis (50%)	2	1135 bp	62.03	3.44	88.02
Knockout_Variovorax_02_2024_K_none_B1_day_6_7805 Species: Mesorhizobium plurifarium (50%)	2	1074 bp	62.10	3.77	73.18
Knockout_Variovorax_02_2024_K_none_B1_day_6_8317 Species: Devosia epidermidihirudinis (50%)	2	1016 bp	65.45	7.23	60.53
Knockout_Variovorax_02_2024_K_none_B1_day_6_3966 Species: Mesorhizobium sp. ORS3359 (50%)	2	1901 bp	62.02	4.10	80.80
Knockout_Variovorax_02_2024_K_none_B1_day_6_4990 Species: RIFOXYA1_FULL_Xanthomonadales_69_10_curated (50%)	2	1565 bp	68.63	5.75	95.85
Knockout_Variovorax_02_2024_K_none_B1_day_6_5758 Species: Candidatus Accumulibacter sp. BA-93 (50%)	2	1389 bp	67.82	10.69	94.38
Knockout_Variovorax_02_2024_K_none_B1_day_6_6014 Species: Methylobacterium extorquens (50%)	2	1337 bp	60.51	4.04	89.08
Knockout_Variovorax_02_2024_K_none_B1_day_6_6526 Species: Bosea sp. LC85 (100%)	2	1247 bp	65.20	3.13	86.37
Knockout_Variovorax_02_2024_K_none_B1_day_6_7294	2	1135 bp	54.27	4.36	100.18
Knockout_Variovorax_02_2024_K_none_B1_day_6_7550 Species: Afipia felis (50%)	2	1103 bp	66.73	3.26	66.91
Knockout_Variovorax_02_2024_K_none_B1_day_6_8318 Species: Nitratireductor indicus (50%)	2	1016 bp	62.20	7.38	98.62

Displaying items 1851-1900 of 3224 in total

Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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