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Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

In projects: Knockout_Variovorax_02_2024_K_none_B1_day_6

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 26.77 Longest contig: 64.27 Kbp Bin length: 6.36 Mbp GC content: 63.53 %
Contigs count: 3224 Features count: 8813 rRNAs count: 1 tRNAs count: 79

Genome completeness

partial RP 17 / 55 MC: 3 BSCG 19 / 51 MC: 5 ASCG 5 / 38 MC: 2
Displaying items 1901-1950 of 3224 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
Knockout_Variovorax_02_2024_K_none_B1_day_6_3711
Species: Paracoccus sp. 361 (50%)
2 2001 bp 55.57 4.50 100.00
Knockout_Variovorax_02_2024_K_none_B1_day_6_4223
Species: Inquilinus limosus (50%)
2 1798 bp 65.74 3.34 97.11
Knockout_Variovorax_02_2024_K_none_B1_day_6_5247
Species: Thermomicrobium roseum (50%)
2 1506 bp 63.01 5.68 90.04
Knockout_Variovorax_02_2024_K_none_B1_day_6_5503
Species: Paracoccus versutus (100%)
2 1442 bp 63.52 3.95 99.86
Knockout_Variovorax_02_2024_K_none_B1_day_6_6527
Species: Rhizobium leguminosarum (50%)
2 1247 bp 61.75 5.77 66.88
Knockout_Variovorax_02_2024_K_none_B1_day_6_6783
Species: RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated (100%)
2 1205 bp 67.88 4.23 100.33
Knockout_Variovorax_02_2024_K_none_B1_day_6_7039
Species: Acidovorax sp. CF316 (50%)
2 1165 bp 69.18 4.89 93.99
Knockout_Variovorax_02_2024_K_none_B1_day_6_7295
Species: Pelodictyon phaeoclathratiforme (50%)
2 1135 bp 63.79 3.96 99.65
Knockout_Variovorax_02_2024_K_none_B1_day_6_3712
Species: Mesorhizobium ciceri (50%)
2 2001 bp 67.87 3.45 90.85
Knockout_Variovorax_02_2024_K_none_B1_day_6_6528
Species: Mesorhizobium plurifarium (50%)
2 1247 bp 61.35 3.61 99.36
Knockout_Variovorax_02_2024_K_none_B1_day_6_7040
Species: Roseomonas cervicalis (100%)
2 1165 bp 66.01 4.38 98.88
Knockout_Variovorax_02_2024_K_none_B1_day_6_7552
Species: Agrobacterium rhizogenes (50%)
2 1103 bp 59.84 5.17 97.10
Knockout_Variovorax_02_2024_K_none_B1_day_6_4737
Species: Burkholderia sp. KJ006 (50%)
2 1628 bp 60.93 5.16 67.81
Knockout_Variovorax_02_2024_K_none_B1_day_6_6785
Species: Bosea sp. LC85 (50%)
2 1204 bp 63.21 3.49 79.24
Knockout_Variovorax_02_2024_K_none_B1_day_6_7041
Species: Mesorhizobium sp. STM 4661 (50%)
2 1165 bp 62.66 4.12 79.31
Knockout_Variovorax_02_2024_K_none_B1_day_6_7297
Species: Rhizobium leguminosarum (50%)
2 1135 bp 62.11 5.55 99.38
Knockout_Variovorax_02_2024_K_none_B1_day_6_7553 2 1103 bp 58.84 6.53 63.10
Knockout_Variovorax_02_2024_K_none_B1_day_6_8065
Species: Mesorhizobium sp. LSJC269B00 (50%)
2 1042 bp 66.41 3.60 100.48
Knockout_Variovorax_02_2024_K_none_B1_day_6_3458
Species: Nitrobacter hamburgensis (50%)
2 2101 bp 63.68 5.14 79.39
Knockout_Variovorax_02_2024_K_none_B1_day_6_4738
Species: Bradyrhizobium sp. LTSPM299 (50%)
2 1628 bp 67.38 4.88 99.32
Knockout_Variovorax_02_2024_K_none_B1_day_6_4994
Species: Oceanithermus profundus (50%)
2 1564 bp 68.54 3.64 100.70
Knockout_Variovorax_02_2024_K_none_B1_day_6_5506
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1442 bp 71.57 6.97 85.51
Knockout_Variovorax_02_2024_K_none_B1_day_6_6018
Species: Rhizobium gallicum (50%)
2 1337 bp 61.33 4.71 57.44
Knockout_Variovorax_02_2024_K_none_B1_day_6_6274
Species: Nitrobacter hamburgensis (50%)
2 1294 bp 59.20 5.22 68.86
Knockout_Variovorax_02_2024_K_none_B1_day_6_6786
Species: Bosea sp. LC85 (50%)
2 1204 bp 67.28 3.74 99.17
Knockout_Variovorax_02_2024_K_none_B1_day_6_7042
Species: Rhizobium leguminosarum (100%)
2 1165 bp 64.29 6.31 92.45
Knockout_Variovorax_02_2024_K_none_B1_day_6_8322
Species: Bosea sp. LC85 (50%)
2 1015 bp 71.63 4.14 88.97
Knockout_Variovorax_02_2024_K_none_B1_day_6_4995
Species: CG_Mariprof_02 (50%)
2 1564 bp 64.58 3.84 87.08
Knockout_Variovorax_02_2024_K_none_B1_day_6_6019
Species: Silicibacter sp. TrichCH4B (50%)
2 1337 bp 68.06 4.82 94.69
Knockout_Variovorax_02_2024_K_none_B1_day_6_6787
Species: Mesorhizobium sp. LNHC232B00 (50%)
2 1204 bp 59.88 3.99 80.23
Knockout_Variovorax_02_2024_K_none_B1_day_6_7299
Species: Mesorhizobium plurifarium (50%)
2 1135 bp 65.55 4.23 93.30
Knockout_Variovorax_02_2024_K_none_B1_day_6_7811
Species: Mesorhizobium sp. L48C026A00 (50%)
2 1074 bp 66.95 4.19 95.25
Knockout_Variovorax_02_2024_K_none_B1_day_6_8067
Species: Pseudomonas stutzeri (50%)
2 1042 bp 65.55 3.74 97.60
Knockout_Variovorax_02_2024_K_none_B1_day_6_8323
Species: Mesorhizobium sp. LNHC221B00 (50%)
2 1015 bp 63.45 3.25 88.67
Knockout_Variovorax_02_2024_K_none_B1_day_6_3972
Species: Thioalkalivibrio sulfidiphilus (50%)
2 1899 bp 63.93 6.56 87.36
Knockout_Variovorax_02_2024_K_none_B1_day_6_6276
Species: Bosea sp. LC85 (100%)
2 1294 bp 69.32 4.29 98.76
Knockout_Variovorax_02_2024_K_none_B1_day_6_6532
Species: Mesorhizobium ciceri (50%)
2 1246 bp 62.92 3.73 72.71
Knockout_Variovorax_02_2024_K_none_B1_day_6_6788
Species: Bosea sp. LC85 (100%)
2 1204 bp 71.01 3.49 99.92
Knockout_Variovorax_02_2024_K_none_B1_day_6_7556
Species: Mesorhizobium sp. L2C084A000 (50%)
2 1102 bp 65.79 4.36 99.36
Knockout_Variovorax_02_2024_K_none_B1_day_6_3461
Species: Haemophilus parainfluenzae (50%)
2 2099 bp 68.37 9.72 88.76
Knockout_Variovorax_02_2024_K_none_B1_day_6_5765
Species: Octadecabacter arcticus (50%)
2 1387 bp 61.43 5.62 76.35
Knockout_Variovorax_02_2024_K_none_B1_day_6_7557
Species: Bosea sp. LC85 (100%)
2 1102 bp 67.51 2.72 100.18
Knockout_Variovorax_02_2024_K_none_B1_day_6_8069
Species: Mesorhizobium sp. LNHC209A00 (50%)
2 1042 bp 63.34 4.32 82.34
Knockout_Variovorax_02_2024_K_none_B1_day_6_8325
Species: Bosea sp. LC85 (50%)
2 1015 bp 67.78 3.40 77.73
Knockout_Variovorax_02_2024_K_none_B1_day_6_4486
Species: uncultured bacterium pTW3 (100%)
2 1701 bp 67.72 6.17 92.77
Knockout_Variovorax_02_2024_K_none_B1_day_6_4742
Species: Devosia epidermidihirudinis (50%)
2 1627 bp 65.89 4.79 99.39
Knockout_Variovorax_02_2024_K_none_B1_day_6_5766
Species: Mesorhizobium sp. ORS3359 (100%)
2 1387 bp 67.34 4.22 89.55
Knockout_Variovorax_02_2024_K_none_B1_day_6_6022
Species: Rhizobium sp. Pop5 (50%)
2 1336 bp 68.56 5.39 100.15
Knockout_Variovorax_02_2024_K_none_B1_day_6_4999
Species: Agrobacterium tumefaciens (50%)
2 1563 bp 63.21 5.09 86.76
Knockout_Variovorax_02_2024_K_none_B1_day_6_5767
Species: Mesorhizobium sp. LSHC420B00 (50%)
2 1387 bp 68.28 4.43 90.19
Displaying items 1901-1950 of 3224 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.