ggKbase | Organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 26.77 Longest contig: 64.27 Kbp Bin length: 6.36 Mbp GC content: 63.53 %

Contigs count: 3224 Features count: 8813 rRNAs count: 1 tRNAs count: 79

Genome completeness

partial RP 17 / 55 MC: 3 BSCG 19 / 51 MC: 5 ASCG 5 / 38 MC: 2

Displaying items 1951-2000 of 3224 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
Knockout_Variovorax_02_2024_K_none_B1_day_6_6023 Species: Mesorhizobium sp. LNJC394B00 (50%)	2	1336 bp	61.83	3.93	99.93
Knockout_Variovorax_02_2024_K_none_B1_day_6_6791 Species: Bosea sp. LC85 (50%)	2	1203 bp	67.83	3.24	88.03
Knockout_Variovorax_02_2024_K_none_B1_day_6_3976 Species: Bosea sp. LC85 (50%)	2	1898 bp	67.81	4.11	83.77
Knockout_Variovorax_02_2024_K_none_B1_day_6_5768 Species: Ensifer adhaerens (50%)	2	1387 bp	62.51	4.76	99.28
Knockout_Variovorax_02_2024_K_none_B1_day_6_7816 Species: Mesorhizobium plurifarium (100%)	2	1073 bp	65.89	4.05	99.81
Knockout_Variovorax_02_2024_K_none_B1_day_6_8328 Species: Mesorhizobium plurifarium (50%)	2	1015 bp	67.00	4.14	99.90
Knockout_Variovorax_02_2024_K_none_B1_day_6_5257 Species: Afipia sp. P52-10 (50%)	2	1503 bp	64.74	4.49	67.07
Knockout_Variovorax_02_2024_K_none_B1_day_6_6025 Species: Bosea sp. LC85 (50%)	2	1336 bp	64.82	3.37	95.43
Knockout_Variovorax_02_2024_K_none_B1_day_6_3978 Species: Mesorhizobium sp. L103C120A0 (50%)	2	1897 bp	65.21	4.43	92.51
Knockout_Variovorax_02_2024_K_none_B1_day_6_4234 Species: Mesorhizobium australicum (50%)	2	1795 bp	69.14	4.35	98.44
Knockout_Variovorax_02_2024_K_none_B1_day_6_5258 Species: Bosea sp. LC85 (100%)	2	1502 bp	67.71	3.50	97.07
Knockout_Variovorax_02_2024_K_none_B1_day_6_5770 Species: Methylobacterium extorquens (50%)	2	1386 bp	66.31	4.55	95.45
Knockout_Variovorax_02_2024_K_none_B1_day_6_6282 Species: Bosea sp. LC85 (100%)	2	1293 bp	65.27	3.94	98.38
Knockout_Variovorax_02_2024_K_none_B1_day_6_6538 Species: Paracoccus sp. 5503 (100%)	2	1245 bp	68.43	4.10	92.29
Knockout_Variovorax_02_2024_K_none_B1_day_6_6794 Species: Aquamicrobium defluvii (50%)	2	1203 bp	68.99	4.99	104.74
Knockout_Variovorax_02_2024_K_none_B1_day_6_7818 Species: Nitratireductor indicus (100%)	2	1073 bp	65.05	4.61	76.89
Knockout_Variovorax_02_2024_K_none_B1_day_6_8074 Species: Bosea sp. LC85 (50%)	2	1042 bp	67.47	3.74	86.08
Knockout_Variovorax_02_2024_K_none_B1_day_6_8330 Species: Sinorhizobium fredii (50%)	2	1015 bp	70.54	5.02	82.17
Knockout_Variovorax_02_2024_K_none_B1_day_6_5259 Species: BJP_IG2103_Dechloromonas_63_51 (50%)	2	1502 bp	65.38	6.39	100.87
Knockout_Variovorax_02_2024_K_none_B1_day_6_5515 Species: Streptomyces sp. NRRL F-4428 (50%)	2	1441 bp	65.44	4.06	80.99
Knockout_Variovorax_02_2024_K_none_B1_day_6_7563 Species: Bosea sp. LC85 (100%)	2	1102 bp	69.96	4.08	94.46
Knockout_Variovorax_02_2024_K_none_B1_day_6_3212 Species: Mesorhizobium metallidurans (50%)	2	2276 bp	67.27	4.28	76.32
Knockout_Variovorax_02_2024_K_none_B1_day_6_4748 Species: Mesorhizobium plurifarium (50%)	2	1626 bp	65.81	3.87	90.77
Knockout_Variovorax_02_2024_K_none_B1_day_6_5004 Species: Bradyrhizobium diazoefficiens (50%)	2	1562 bp	60.69	3.94	96.22
Knockout_Variovorax_02_2024_K_none_B1_day_6_5516 Species: Rhizobium sp. CF080 (50%)	2	1440 bp	66.46	4.38	79.79
Knockout_Variovorax_02_2024_K_none_B1_day_6_7052 Species: Mesorhizobium sp. ORS3359 (50%)	2	1164 bp	62.46	4.12	55.67
Knockout_Variovorax_02_2024_K_none_B1_day_6_7308 Species: Mesorhizobium ciceri (50%)	2	1134 bp	64.81	3.70	91.27
Knockout_Variovorax_02_2024_K_none_B1_day_6_8332 Species: Agrobacterium tumefaciens (50%)	2	1015 bp	63.05	3.25	99.61
Knockout_Variovorax_02_2024_K_none_B1_day_6_6029 Species: Bosea sp. LC85 (50%)	2	1335 bp	72.66	4.61	85.62
Knockout_Variovorax_02_2024_K_none_B1_day_6_6285 Species: Mesorhizobium huakuii (50%)	2	1292 bp	62.38	4.18	98.92
Knockout_Variovorax_02_2024_K_none_B1_day_6_8333 Species: Bosea sp. LC85 (100%)	2	1015 bp	67.39	3.10	105.22
Knockout_Variovorax_02_2024_K_none_B1_day_6_5262 Species: Nitratireductor basaltis (50%)	2	1502 bp	63.91	6.49	94.27
Knockout_Variovorax_02_2024_K_none_B1_day_6_5774 Species: Rhizobium etli (50%)	2	1385 bp	64.19	4.77	76.25
Knockout_Variovorax_02_2024_K_none_B1_day_6_7054 Species: Mesorhizobium loti (50%)	2	1164 bp	62.63	3.87	90.46
Knockout_Variovorax_02_2024_K_none_B1_day_6_7310 Species: Nitratireductor indicus (50%)	2	1133 bp	58.78	6.62	109.89
Knockout_Variovorax_02_2024_K_none_B1_day_6_7566 Species: Bosea sp. LC85 (100%)	2	1101 bp	71.30	3.81	94.28
Knockout_Variovorax_02_2024_K_none_B1_day_6_7822 Species: Pseudooceanicola atlanticus (50%)	2	1073 bp	58.62	2.80	92.54
Knockout_Variovorax_02_2024_K_none_B1_day_6_4239 Species: Mesorhizobium plurifarium (50%)	2	1793 bp	63.08	4.43	90.02
Knockout_Variovorax_02_2024_K_none_B1_day_6_5519 Species: Aquamicrobium defluvii (100%)	2	1440 bp	63.61	4.79	94.38
Knockout_Variovorax_02_2024_K_none_B1_day_6_6031 Species: Methylobacterium extorquens (50%)	2	1335 bp	66.44	3.15	94.38
Knockout_Variovorax_02_2024_K_none_B1_day_6_7055 Species: RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated (50%)	2	1163 bp	65.35	5.29	83.32
Knockout_Variovorax_02_2024_K_none_B1_day_6_7311 Species: Mesorhizobium sp. ORS3324 (50%)	2	1133 bp	64.34	4.24	90.29
Knockout_Variovorax_02_2024_K_none_B1_day_6_5264 Species: Comamonas testosteroni (50%)	2	1501 bp	49.77	6.90	78.95
Knockout_Variovorax_02_2024_K_none_B1_day_6_6032 Species: RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated (50%)	2	1335 bp	65.47	6.63	72.36
Knockout_Variovorax_02_2024_K_none_B1_day_6_6544 Species: Bradyrhizobium diazoefficiens (50%)	2	1244 bp	65.92	5.67	93.33
Knockout_Variovorax_02_2024_K_none_B1_day_6_6800 Species: Paracoccus aminophilus (100%)	2	1202 bp	65.47	5.12	100.33
Knockout_Variovorax_02_2024_K_none_B1_day_6_7312 Species: Mesorhizobium sp. STM 4661 (100%)	2	1133 bp	55.43	2.65	89.23
Knockout_Variovorax_02_2024_K_none_B1_day_6_8080 Species: Rhizobium etli (50%)	2	1040 bp	68.46	4.76	98.65
Knockout_Variovorax_02_2024_K_none_B1_day_6_5009 Species: Mesorhizobium sp. ORS3359 (50%)	2	1562 bp	59.15	4.23	88.16
Knockout_Variovorax_02_2024_K_none_B1_day_6_5521 Species: Mesorhizobium metallidurans (50%)	2	1440 bp	64.93	4.17	63.96

Displaying items 1951-2000 of 3224 in total

Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Knockout_Variovorax_02_2024_K_none_B1_day_6_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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